| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0138 |
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| Symbol | rplA |
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| ID | 4277120 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 155195 |
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| End bp | 155896 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638132888 |
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| Product | 50S ribosomal protein L1 |
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| Protein accession | YP_748839 |
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| Protein GI | 114561326 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0081] Ribosomal protein L1 |
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| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000000376196 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCAAAGC TAACTAAGCG TGCTCGCGTT ATCCGCGAAA AAGTTGATGC AACAAAATTG
TATGACATCA ACGAAGCCGT AGTACTTTTA CAAGAATTAG CGACTGCTAA ATTTGTTGAG
AGTGTTGACG TAGCTGTTAA TCTAGGTATC GATCCTCGTA AATCAGATCA AAACGTGCGT
GGTGCTACTG TACTTCCACA TGGTACTGGT CGTGATGTTC GTGTTGCTGT ATTCACACAA
GGTGCAAACG CTGAAGCTGC TATCGCTGCT GGCGCTGAAC TAGTGGGTAT GGAAGATTTA
GCTGAAAAAG TTAAAGCTGG CGAAATGAAC TTTGACGTTG TTATCGCATC TCCAGATGCA
ATGCGCGTTG TTGGTATGTT AGGTCAAATC TTAGGCCCAC GTGGTTTAAT GCCTAACCCT
AAAACTGGTA CAGTAACGCC AAACGTTGCT GAAGCAGTTA AGAATGCCAA AGCGGGTCAA
GTTCGTTACA GAAACGACAA AAACGGTATT ATCCATACAA CTATCGGTAA AGTAACTTTT
ACTACTGAGC AGTTGAAAGA AAACTTAGAA TCGTTAGTGT CAGCACTGAA AAAGGCTAAG
CCTGCAGTTG CTAAAGGCAT TTACGTGAAA AAGATTAGCA TCTCTACCAC TATGGGTGCA
GGTGTTGCTA TCGACCAGGG TTCTTTGGAA GAAGCGAAGT AA
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| Protein sequence | MAKLTKRARV IREKVDATKL YDINEAVVLL QELATAKFVE SVDVAVNLGI DPRKSDQNVR
GATVLPHGTG RDVRVAVFTQ GANAEAAIAA GAELVGMEDL AEKVKAGEMN FDVVIASPDA
MRVVGMLGQI LGPRGLMPNP KTGTVTPNVA EAVKNAKAGQ VRYRNDKNGI IHTTIGKVTF
TTEQLKENLE SLVSALKKAK PAVAKGIYVK KISISTTMGA GVAIDQGSLE EAK
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