| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0123 |
|---|
| Symbol | |
|---|
| ID | 4277105 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 136557 |
|---|
| End bp | 137666 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638132864 |
|---|
| Product | stearoyl-CoA 9-desaturase |
|---|
| Protein accession | YP_748824 |
|---|
| Protein GI | 114561311 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1398] Fatty-acid desaturase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00541017 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAC CTCCAATCAT TTGGCTTAAT ACCTTGTTAT TTGCCATTAC TTTTATCGGC
GCCGTGGTAT TAATCCCTTG GCGTGGTTTT ACCCATGGCT TTGATGGCAT TGAATGGATT
GCATTTGTTG TTTTCGCTTA CGCAAGTGGT CTATCGATTA CTGCGGGTTA CCACAGATTA
TGGTCACACA AAGCTTATAA AGCCCATGCA TCAGTTCGTT TTTTATACGC ATTAGGTGGA
GCATTGGCGC TACAGAACAG CGCATTGCAT TGGTGTAGTG ATCACCGCAT CCATCACAAA
CATGTTGATA ATAATGATAA AGACCCGTAC TCAGCTCAAA TGGGATTTTG GTACAGCCAC
ATAGGTTGGA TGCTACGTGA GTATCAAGCG AGTCGTTACA GCGACTACAA CAACGTGCGC
GACTTACAAA ACGATCGTAT CGTTATGTGG CAGCACAAGC ACTACTTAGC CTTAGTGATC
TTAATGAATA TTGGTTTACC AGCATTTATA GGTTGGTTAA ATGGCGATAT TTTATCAATG
GTTCTTATGG CCGGTTTACT ACGCCTAGTG GTTGTACATC ACTGTACTTT CTTTATTAAC
TCATTAGCCC ATATTTGGGG TAAACAACCG TACACAGATA AAAACTCAGC CCGAGATAAT
GCATTTTTAG CGTTACTTAC ATACGGTGAG GGGTATCACA ACTTCCATCA TATTTTTGAA
AATGATTATC GCAATGGCAT CAAATGGTGG GACTACGATC CAACCAAATG GTTAATCAAG
CTTATGAACT GGTTTGGTTT AGCGAGTGAT TTACGTAAAG TGCCACAAGA GCGTATTGAA
AGTGCACGTT TGCAGATGCA ACTTTTACAA GCTCAGAATC AGGTTGCTCA CTTACCTAAC
TGCGATGAAA TTATAGAAAA GTTTCAAGCA GAGTATGAGC TGATGAAGCA ACACTTAGTT
GACTATTATC AAGCCAAAAA GAGTTTGTTA GAGGCGAAGC GTAAGCAACT TACAGATCAC
AATCTGAAGC AACAAGTGCA ATTATTACGT AATCAGTTTC TTGAACAACA ACGAAATTGG
AAAAGCCTCA CAGGTGCCTA CGCCCAGTAA
|
|---|
| Protein sequence | MKKPPIIWLN TLLFAITFIG AVVLIPWRGF THGFDGIEWI AFVVFAYASG LSITAGYHRL
WSHKAYKAHA SVRFLYALGG ALALQNSALH WCSDHRIHHK HVDNNDKDPY SAQMGFWYSH
IGWMLREYQA SRYSDYNNVR DLQNDRIVMW QHKHYLALVI LMNIGLPAFI GWLNGDILSM
VLMAGLLRLV VVHHCTFFIN SLAHIWGKQP YTDKNSARDN AFLALLTYGE GYHNFHHIFE
NDYRNGIKWW DYDPTKWLIK LMNWFGLASD LRKVPQERIE SARLQMQLLQ AQNQVAHLPN
CDEIIEKFQA EYELMKQHLV DYYQAKKSLL EAKRKQLTDH NLKQQVQLLR NQFLEQQRNW
KSLTGAYAQ
|
|---|
| |