Gene Sfri_0106 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0106 
Symbol 
ID4277176 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp120502 
End bp122046 
Gene Length1545 bp 
Protein Length514 aa 
Translation table11 
GC content43% 
IMG OID638132847 
Productgeneral secretory pathway protein E 
Protein accessionYP_748807 
Protein GI114561294 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 
TIGRFAM ID[TIGR02533] general secretory pathway protein E 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAGAAC CATTAGCCCA AGTATCTAGT GAAGTTGCCA TGGAAGTTGT TGAAGGTGAT 
GAAGTTTTTC ATTCGACGAG TAAAGAGCGC TTGCCGTTTG CTTTTTCGCA CCGCTTTCAA
TTAGTGTTAG CGAAAGAAAA CGATCAGCTT TGTCTTTTCT ATACCGATAA CACACCACTT
AGCGCCATGC TAGAGGTACG GCGCTACGCG GGTGTTGAGT TACCGTTAAT TAAACTAGAA
GTGGCTAAGT TTGAAGCTAA ATTGACCCTG GCGTACCAAG CCAACTCTTC AGAAGCGCAA
CAGCTTATGG AAGATATTGG TAATGAAATG GACTTGTTTA CTCTAGCTGA GGAACTGCCA
CAAACAGAAG ACTTGCTTGA GGGCGACGAT GATGCGCCGA TTATTAAATT AATTAATGCG
CTGTTATCAG AAGCAATTAA AGAAGAAGCC TCAGACATTC ACGTCGAAAC CTATGAGAAA
CAACTCGTTG TTCGTTTCCG TATTGATGGC GTGTTGAAAG AAGTATTAAA GCCAAATCGT
AAATTGTCGT CTTTGTTAGT GTCGCGTATT AAAGTTATGG CACGTTTAGA CATTGCCGAA
AAACGTCTGC CACAAGATGG CCGTATTTCG TTGCGTATTG CGGGTCGTGC TGTCGATGTG
CGGGTATCAA CTATGCCATC AAGTCATGGT GAGCGTGTGG TAATGCGTTT ATTGGACAAA
AATACCGGCA ACTTAGACTT ACAACAACTG GGTATGACAC CAGGCATTCG TGAAAAATTC
GATGAGTTAA TTCGTAAGCC ACACGGCATT ATTCTTGTTA CCGGGCCTAC TGGTTCTGGT
AAAAGTACCA CTTTGTACGC TGGGTTAACG GAAATAAATT CTAAAGATAC CAATATTTTA
ACCGTTGAAG ATCCTATTGA GTATGAGTTA GAGGGCGTTG GACAAACTCA GGTAAACACT
AAAGTCGACA TGACTTTTGC TCGAGGATTA CGCGCAATTT TACGTCAAGA TCCCGATGTA
GTCATGATTG GTGAAATTCG TGATTTAGAA ACGGCGCAAA TTGCAGTTCA AGCATCTTTA
ACTGGTCACT TAGTTATTTC AACCTTGCAT ACCAATACCG CATCTGGGGC AATTACCCGT
CTACAAGATA TGGGCGTAGA ACCCTTTTTA GTGTCATCAA GTTTGCTTGG CGTGCTTGCA
CAACGCTTAA TTCGAACATT ATGCCCACAG TGTAAAGAAG CACATGAGCC TGATGAGCGT
GAACGCGAGT TACTGGGTAT TACTGCAAAC GACACTCGTA TCATTTACCG CGCAAAAGGT
TGTAAGGCCT GTGGTCAAAA TGGTTATCGT GGTCGAACGG GTATTCATGA GTTACTTATC
GTTGATGATA ATGTCCGTGA GTTAATTCAT GGCGGCAGGG GCGAATTAGC CATTGAAAAA
TATGTGCGTA AATCGATTCC AAGTATTCGC CATGACGGCA TGAGTAAAGT ACTCGCTGGT
GTGACAACGC TAGAAGAAGT ATTACGCGTT ACACGCGAGG AGTAA
 
Protein sequence
MTEPLAQVSS EVAMEVVEGD EVFHSTSKER LPFAFSHRFQ LVLAKENDQL CLFYTDNTPL 
SAMLEVRRYA GVELPLIKLE VAKFEAKLTL AYQANSSEAQ QLMEDIGNEM DLFTLAEELP
QTEDLLEGDD DAPIIKLINA LLSEAIKEEA SDIHVETYEK QLVVRFRIDG VLKEVLKPNR
KLSSLLVSRI KVMARLDIAE KRLPQDGRIS LRIAGRAVDV RVSTMPSSHG ERVVMRLLDK
NTGNLDLQQL GMTPGIREKF DELIRKPHGI ILVTGPTGSG KSTTLYAGLT EINSKDTNIL
TVEDPIEYEL EGVGQTQVNT KVDMTFARGL RAILRQDPDV VMIGEIRDLE TAQIAVQASL
TGHLVISTLH TNTASGAITR LQDMGVEPFL VSSSLLGVLA QRLIRTLCPQ CKEAHEPDER
ERELLGITAN DTRIIYRAKG CKACGQNGYR GRTGIHELLI VDDNVRELIH GGRGELAIEK
YVRKSIPSIR HDGMSKVLAG VTTLEEVLRV TREE