Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0106 |
Symbol | |
ID | 4277176 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 120502 |
End bp | 122046 |
Gene Length | 1545 bp |
Protein Length | 514 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638132847 |
Product | general secretory pathway protein E |
Protein accession | YP_748807 |
Protein GI | 114561294 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAGAAC CATTAGCCCA AGTATCTAGT GAAGTTGCCA TGGAAGTTGT TGAAGGTGAT GAAGTTTTTC ATTCGACGAG TAAAGAGCGC TTGCCGTTTG CTTTTTCGCA CCGCTTTCAA TTAGTGTTAG CGAAAGAAAA CGATCAGCTT TGTCTTTTCT ATACCGATAA CACACCACTT AGCGCCATGC TAGAGGTACG GCGCTACGCG GGTGTTGAGT TACCGTTAAT TAAACTAGAA GTGGCTAAGT TTGAAGCTAA ATTGACCCTG GCGTACCAAG CCAACTCTTC AGAAGCGCAA CAGCTTATGG AAGATATTGG TAATGAAATG GACTTGTTTA CTCTAGCTGA GGAACTGCCA CAAACAGAAG ACTTGCTTGA GGGCGACGAT GATGCGCCGA TTATTAAATT AATTAATGCG CTGTTATCAG AAGCAATTAA AGAAGAAGCC TCAGACATTC ACGTCGAAAC CTATGAGAAA CAACTCGTTG TTCGTTTCCG TATTGATGGC GTGTTGAAAG AAGTATTAAA GCCAAATCGT AAATTGTCGT CTTTGTTAGT GTCGCGTATT AAAGTTATGG CACGTTTAGA CATTGCCGAA AAACGTCTGC CACAAGATGG CCGTATTTCG TTGCGTATTG CGGGTCGTGC TGTCGATGTG CGGGTATCAA CTATGCCATC AAGTCATGGT GAGCGTGTGG TAATGCGTTT ATTGGACAAA AATACCGGCA ACTTAGACTT ACAACAACTG GGTATGACAC CAGGCATTCG TGAAAAATTC GATGAGTTAA TTCGTAAGCC ACACGGCATT ATTCTTGTTA CCGGGCCTAC TGGTTCTGGT AAAAGTACCA CTTTGTACGC TGGGTTAACG GAAATAAATT CTAAAGATAC CAATATTTTA ACCGTTGAAG ATCCTATTGA GTATGAGTTA GAGGGCGTTG GACAAACTCA GGTAAACACT AAAGTCGACA TGACTTTTGC TCGAGGATTA CGCGCAATTT TACGTCAAGA TCCCGATGTA GTCATGATTG GTGAAATTCG TGATTTAGAA ACGGCGCAAA TTGCAGTTCA AGCATCTTTA ACTGGTCACT TAGTTATTTC AACCTTGCAT ACCAATACCG CATCTGGGGC AATTACCCGT CTACAAGATA TGGGCGTAGA ACCCTTTTTA GTGTCATCAA GTTTGCTTGG CGTGCTTGCA CAACGCTTAA TTCGAACATT ATGCCCACAG TGTAAAGAAG CACATGAGCC TGATGAGCGT GAACGCGAGT TACTGGGTAT TACTGCAAAC GACACTCGTA TCATTTACCG CGCAAAAGGT TGTAAGGCCT GTGGTCAAAA TGGTTATCGT GGTCGAACGG GTATTCATGA GTTACTTATC GTTGATGATA ATGTCCGTGA GTTAATTCAT GGCGGCAGGG GCGAATTAGC CATTGAAAAA TATGTGCGTA AATCGATTCC AAGTATTCGC CATGACGGCA TGAGTAAAGT ACTCGCTGGT GTGACAACGC TAGAAGAAGT ATTACGCGTT ACACGCGAGG AGTAA
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Protein sequence | MTEPLAQVSS EVAMEVVEGD EVFHSTSKER LPFAFSHRFQ LVLAKENDQL CLFYTDNTPL SAMLEVRRYA GVELPLIKLE VAKFEAKLTL AYQANSSEAQ QLMEDIGNEM DLFTLAEELP QTEDLLEGDD DAPIIKLINA LLSEAIKEEA SDIHVETYEK QLVVRFRIDG VLKEVLKPNR KLSSLLVSRI KVMARLDIAE KRLPQDGRIS LRIAGRAVDV RVSTMPSSHG ERVVMRLLDK NTGNLDLQQL GMTPGIREKF DELIRKPHGI ILVTGPTGSG KSTTLYAGLT EINSKDTNIL TVEDPIEYEL EGVGQTQVNT KVDMTFARGL RAILRQDPDV VMIGEIRDLE TAQIAVQASL TGHLVISTLH TNTASGAITR LQDMGVEPFL VSSSLLGVLA QRLIRTLCPQ CKEAHEPDER ERELLGITAN DTRIIYRAKG CKACGQNGYR GRTGIHELLI VDDNVRELIH GGRGELAIEK YVRKSIPSIR HDGMSKVLAG VTTLEEVLRV TREE
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