| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0092 |
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| Symbol | |
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| ID | 4278264 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 105856 |
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| End bp | 106533 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638132833 |
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| Product | pseudouridine synthase Rlu family protein |
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| Protein accession | YP_748793 |
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| Protein GI | 114561280 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR01621] pseudouridine synthase Rlu family protein, TIGR01621 |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.752208 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTATCAAG TGCTCAGTGA TCAACCAGAC TTTATTGTCA TCAGCAAGTC CGTGAATGTT
CATTTTCACA GTCAAGATGG AAGTGCTGGG GTGATTGCAC AGGCTGAGGC TGATTTAGGT
TGCAAGCTTT ACCCTGTTCA TCGACTCGAT ACACCGACTT CAGGGTTGCT GATTGTGGCG
AAATCTCCTC AAGCTGCAAA TGTGTTTACC AAAATGTTTA CTGAGCATAA AGTACAAAAA
TATTATTTGG CGATTGCTTG TGGTAAACCT AAAAAGAAAC AAGGCTGGAT TATCGGCGAC
ATGGCTAAGT CACGTCGCAG TATGTATAAG TTACTGCGGA CCACTGAAAA CCCTGCAGTG
ACACAGTTTT TTAGTCAGAG TATTGCCTCT GGTATGCGGA TGTATTTACT GAAACCGTTG
AGCGGTAAAA CCCATCAATT AAGAGTGGCT TTAGCCAGTA TTGGCGTGCC TATTTTAGGT
GATAAACTAT ATGGTGATGA GCTGAGCGAT AGATGTTATT TACATGCTTA TAGTGTGCAT
TTTACCTACT TAGAACAGGA TTATTCTTTT AAGCAACTGC CTCAATTCGG TAAGCAGTTT
TTGTTACCTG AATGCCAACA ACTTATGATG AATCAATGGC AATCACCGAA TGACTTGCCG
TGGCCGAATA AAGACTAA
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| Protein sequence | MYQVLSDQPD FIVISKSVNV HFHSQDGSAG VIAQAEADLG CKLYPVHRLD TPTSGLLIVA
KSPQAANVFT KMFTEHKVQK YYLAIACGKP KKKQGWIIGD MAKSRRSMYK LLRTTENPAV
TQFFSQSIAS GMRMYLLKPL SGKTHQLRVA LASIGVPILG DKLYGDELSD RCYLHAYSVH
FTYLEQDYSF KQLPQFGKQF LLPECQQLMM NQWQSPNDLP WPNKD
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