Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0048 |
Symbol | |
ID | 4278255 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 62765 |
End bp | 63379 |
Gene Length | 615 bp |
Protein Length | 204 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638132789 |
Product | chorismate lyase |
Protein accession | YP_748749 |
Protein GI | 114561236 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG3161] 4-hydroxybenzoate synthetase (chorismate lyase) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACGTGA CCAGTATTAG CTTTCCTTAT GGTGAATCAA TTCATTGGTT TTCGCCACAA AAGATCGATT CATTGCCTCA TAGCCAACTT AAAGAGTGGC TATTAGCAAC CGGAAGTTTG ACCCAACGCC TCAAGACACA CTGCAAACAC TTTGAAGTAA AAGTGTTAGG CGAGCATTTA CTTGAGCCTC TGGCGGATGA ATTTCCTGCT CAAACTAACC CCGTTTGGAT CCGCGAAGTA TTATTGTGTC TTGACGGTAC CCCGTGGGTA TTTGCCCGCA CACTGATCCC ACAAACGATT TTAGGCTCTC AAACCCCTAA CTATCAAAAT GCTGATGATA AACAGATTCG TGAGCAACAG AATGATTTTA CTCGCCTTGG CACTCGGCCT TTAGGTGAAT TACTGTTTAG TAGCCCAGAC ATTACTCCCG GCAATATTGA AGTCGCTCAG TTTGAAACCT GTGGCCGTTT AGCTGCCCTA GCCACCAGCT TAAATCAACA GGTTAATAGT AGTTTATGGG GACGTAGACG TTACTTTAAC TTGCACGGTT CACAGCTAAT TGTCAGCGAA ATATTTCTGC CTGCTGCGGT CGAGTACATC AACCAAAGCA TTTAA
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Protein sequence | MNVTSISFPY GESIHWFSPQ KIDSLPHSQL KEWLLATGSL TQRLKTHCKH FEVKVLGEHL LEPLADEFPA QTNPVWIREV LLCLDGTPWV FARTLIPQTI LGSQTPNYQN ADDKQIREQQ NDFTRLGTRP LGELLFSSPD ITPGNIEVAQ FETCGRLAAL ATSLNQQVNS SLWGRRRYFN LHGSQLIVSE IFLPAAVEYI NQSI
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