Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0036 |
Symbol | |
ID | 4278243 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 39408 |
End bp | 40631 |
Gene Length | 1224 bp |
Protein Length | 407 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 638132774 |
Product | diguanylate cyclase |
Protein accession | YP_748737 |
Protein GI | 114561224 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000170685 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCAAACTA AAGGTAGCAT TAACAATAAA CACATTGCCT ATGTCAACGT TAAGAGTCAC CTACTGCTAC TTGCTGTGCC TTTATTATTG TTCGTCCTCA TTTTCACATT CGCCATACCC GAGAATTCAA TTCCCTATTT ATATCTAATA CTTATTTGCA GTGTTTATGC TTTGAGTTAT GGCATTACGT ATTACATACA CAAACAAAAT ATTTTGCGGC TTTGGCAACA TTTAGAGCAT GTGATCCACA TTAACGATAC CACTTTTGAG TTGGTGAATT TATCTAGTCA ATATGATTCT GAAAATGCTT TTTTAGACGC CCTATTACAA AAAGCGGTAA GTGCTATAGA TGATGCTGAA ATGGGCAGTA TTATTCTGGT TGATAAAAAA ACTAAAAGAC TACAATTTGA GTCGGTAGTG GGCTTGGATA TAAAGGCACT TCGAAAAATA AATTTTACTC TTGAGGAGAC TTTTCAATTC AGAAAGACTC ATGGCCGTTG TGATAAAGCT GTTGTTATTA ACAATATGAA AAACATCAAT GCTAAAAGTA CCCTCACTAA CGATGACCAA CATGCACTTT TACATGCGTC AATAAAACCC ATTTGTTCCA CCTTGTCTAG CCCTATCCGT ATTGACGGAG AGCTTTACGG AATGATGAAT TTAGACAGTA GCAAGATGGA AGCCTTTGGT GACTATGATA TAAATCTGGT TAATATTCTT ACATCAGAAG CCGCAAACGC GATTTCACTG TACCAAAAGT CTAAAAAAAT TGAGATTTTG GCTGATTATG ACGGCTTAAC CGAGCTGTAT AATCGCAAAA AATTTGATGC AACGATTCTG CAATGGCAAC ATCACCCAGA GTTAGCAAGC TATATCATTA TTTTGGATAT GGATAACTTA AAGCCGCTAA ATGATCAGCA CGGACATCAG GCCGGGGACG ATGCATTAAA GGCTTTTGCG CAATCACTAA AATCAATGTG GCATCCTCAT TTTTTAGTCG CTAGATATGG CGGTGATGAA TTTATTGCAT TATGCCGTGG CCCCATCGAT GTCTTAGAGC AGCAAGTAAT ACAATTGCAG CATGATCTAG CGCTGTTAAG CCCCGCAATT CATTTTAGCT ACGGATTTGC TCAGTATGAT CAAGATTGGG CTAACGCGTT TAAACAGGCA GATAATAATA TGTATAGCCA AAAGCGACTG AAGAAACAAC TGGATCAGCC TTAA
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Protein sequence | MQTKGSINNK HIAYVNVKSH LLLLAVPLLL FVLIFTFAIP ENSIPYLYLI LICSVYALSY GITYYIHKQN ILRLWQHLEH VIHINDTTFE LVNLSSQYDS ENAFLDALLQ KAVSAIDDAE MGSIILVDKK TKRLQFESVV GLDIKALRKI NFTLEETFQF RKTHGRCDKA VVINNMKNIN AKSTLTNDDQ HALLHASIKP ICSTLSSPIR IDGELYGMMN LDSSKMEAFG DYDINLVNIL TSEAANAISL YQKSKKIEIL ADYDGLTELY NRKKFDATIL QWQHHPELAS YIIILDMDNL KPLNDQHGHQ AGDDALKAFA QSLKSMWHPH FLVARYGGDE FIALCRGPID VLEQQVIQLQ HDLALLSPAI HFSYGFAQYD QDWANAFKQA DNNMYSQKRL KKQLDQP
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