Gene Sfri_0034 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0034 
SymbolaroE 
ID4278311 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp38321 
End bp39154 
Gene Length834 bp 
Protein Length277 aa 
Translation table11 
GC content42% 
IMG OID638132772 
Productshikimate 5-dehydrogenase 
Protein accessionYP_748735 
Protein GI114561222 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0169] Shikimate 5-dehydrogenase 
TIGRFAM ID[TIGR00507] shikimate 5-dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0039291 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAGATA AATATGCTGT ATTTGGGAAT CCGATAGCGC AAAGTAAGTC ACCATTTATA 
CATACTGAGT TTGCCAAGCA AACTCAGCAA GACTTAAGCT ATGAAGCTAT TCTCGCGCCT
GTCGATCAAT TTGACTCTTC GTTAGTGGCA TTTTTTGCCG ATGGTGGTAA AGGCGCCAAT
GTTACAGCAC CTTTTAAAGA ACAAGCATTT TCCATGTGTG ACGAACTCAG TGAAATGGCT
AAACTCGCTG GTTCAGTAAA TACCCTGTTT AATTTACCCT ACGGTAAAAT TGGCGGTGAC
AATACCGATG GTGTTGGCTT GGTGAATGAC CTTGAAATGC TGTTTGGTTC GCTAAAAGGT
AAGCGAGTGT TATTGGTGGG TGCTGGTGGC GCGGCAAGAG GCTGTATTTT ACCTATATTA
CAGCACAATG TGGCTCAGTT GATTATCTGT AATCGGACTC ACGAAAAAGC AGAGCAACTT
CAAACCTTAT TCAATGAGTA CGGTAACTTT TTTGCTAAAC CCATTGAAGA GCTAATATCG
CCATTTGATT TAGTTATTAA CTCAACTTCA GCAGGTCTAT CTGGACAATT AATTGCCCTG
CCTAGCGTTA TAGTCGATGA AACAACAGAT TGTTACGACA TGACTTATAG CCAACAAACC
ACTGTTTTTA ATCAATGGGC TCAAGCGCAA AATGCGCGTA AAACTGCTGA TGGCTTAGGT
ATGTTGGTTG GTCAAGCGGC TAAAAGCTTT AGTTTATGGC GTGGGATTAC TCCTGATACG
GGTTCGGTTA TGCGAAAACT GCGTGAATCA TTAGCGCAAG AGGCAATAGA TTAA
 
Protein sequence
MTDKYAVFGN PIAQSKSPFI HTEFAKQTQQ DLSYEAILAP VDQFDSSLVA FFADGGKGAN 
VTAPFKEQAF SMCDELSEMA KLAGSVNTLF NLPYGKIGGD NTDGVGLVND LEMLFGSLKG
KRVLLVGAGG AARGCILPIL QHNVAQLIIC NRTHEKAEQL QTLFNEYGNF FAKPIEELIS
PFDLVINSTS AGLSGQLIAL PSVIVDETTD CYDMTYSQQT TVFNQWAQAQ NARKTADGLG
MLVGQAAKSF SLWRGITPDT GSVMRKLRES LAQEAID