Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_0034 |
Symbol | aroE |
ID | 4278311 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | + |
Start bp | 38321 |
End bp | 39154 |
Gene Length | 834 bp |
Protein Length | 277 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638132772 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_748735 |
Protein GI | 114561222 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0039291 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAGATA AATATGCTGT ATTTGGGAAT CCGATAGCGC AAAGTAAGTC ACCATTTATA CATACTGAGT TTGCCAAGCA AACTCAGCAA GACTTAAGCT ATGAAGCTAT TCTCGCGCCT GTCGATCAAT TTGACTCTTC GTTAGTGGCA TTTTTTGCCG ATGGTGGTAA AGGCGCCAAT GTTACAGCAC CTTTTAAAGA ACAAGCATTT TCCATGTGTG ACGAACTCAG TGAAATGGCT AAACTCGCTG GTTCAGTAAA TACCCTGTTT AATTTACCCT ACGGTAAAAT TGGCGGTGAC AATACCGATG GTGTTGGCTT GGTGAATGAC CTTGAAATGC TGTTTGGTTC GCTAAAAGGT AAGCGAGTGT TATTGGTGGG TGCTGGTGGC GCGGCAAGAG GCTGTATTTT ACCTATATTA CAGCACAATG TGGCTCAGTT GATTATCTGT AATCGGACTC ACGAAAAAGC AGAGCAACTT CAAACCTTAT TCAATGAGTA CGGTAACTTT TTTGCTAAAC CCATTGAAGA GCTAATATCG CCATTTGATT TAGTTATTAA CTCAACTTCA GCAGGTCTAT CTGGACAATT AATTGCCCTG CCTAGCGTTA TAGTCGATGA AACAACAGAT TGTTACGACA TGACTTATAG CCAACAAACC ACTGTTTTTA ATCAATGGGC TCAAGCGCAA AATGCGCGTA AAACTGCTGA TGGCTTAGGT ATGTTGGTTG GTCAAGCGGC TAAAAGCTTT AGTTTATGGC GTGGGATTAC TCCTGATACG GGTTCGGTTA TGCGAAAACT GCGTGAATCA TTAGCGCAAG AGGCAATAGA TTAA
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Protein sequence | MTDKYAVFGN PIAQSKSPFI HTEFAKQTQQ DLSYEAILAP VDQFDSSLVA FFADGGKGAN VTAPFKEQAF SMCDELSEMA KLAGSVNTLF NLPYGKIGGD NTDGVGLVND LEMLFGSLKG KRVLLVGAGG AARGCILPIL QHNVAQLIIC NRTHEKAEQL QTLFNEYGNF FAKPIEELIS PFDLVINSTS AGLSGQLIAL PSVIVDETTD CYDMTYSQQT TVFNQWAQAQ NARKTADGLG MLVGQAAKSF SLWRGITPDT GSVMRKLRES LAQEAID
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