| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0020 |
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| Symbol | |
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| ID | 4278297 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 24403 |
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| End bp | 25845 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638132758 |
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| Product | potassium uptake protein, TrkH family protein |
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| Protein accession | YP_748721 |
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| Protein GI | 114561208 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0168] Trk-type K+ transport systems, membrane components |
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| TIGRFAM ID | [TIGR00933] potassium uptake protein, TrkH family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.76809 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTAACG TCAAACAAAT CATTTTCATC CTCGGTATTT TTCTCTCAAT ACTGACAGGA
TTTATGTTAG TTCCAATGGC TTTCGCACTA TTTTATGGCG AAGAAACCAT CGGTGACTTT
ATGCTGTCCG GTTTATTTAC CGGCTTTATT GCTATTTTGT GCATTCAAAA TGGTCGCAAC
CATCATTTTA GTCTTAACAT TCGCGATATG TTTATGTTGA CCAGTATCAC TTGGTTTGTC
GTGAGCTTAT TCGCCGCACT GCCCTTCACG CTTTATCACG GTATTAATTA TACTGACGCT
TTTTTTGAAA CGATGTCAGG CATAACCACT ACCGGTTCAA CAGTATTATC CGGTTTAGAC
AGTATGGACC ATAGTATCTT AGTCTGGCGT TCATTATTGC AATGGCTTGG CGGCATTGGT
TTCATTGTAA TGGCCGTGGC AATCCTGCCG TTTTTGAACG TGGGGGGAAT GCGCTTATTT
AGAACTGAAT CATCAGACTG GAGCGACAAA ACGATTCCTC GCACCCAGCA CATGGCCAAA
CATTTATTTC TGATCTATGT CGCCTTAACA CTACTGTGCA CATTGTCCTA TCACCTTGCT
GGCATGCATT GGTTTGAAGC TATCAACCAT GCCATGACCA CATTATCAAC AGGTGGATAT
TCCACTTCAG ACAGCTCAAT GGCGGCCTTT TCACACGAGG CACATTGGGT TGGTATTGTG
TTTATGTTAG CGGGTGGATT ACCGTTACTA ATGTTTGTTC AAACCATACA ACAACGCAGC
TTACGCTTAT GGAATGATCA ACAAGTAAAA GGCTTTTTAC GCTTTGTGTT ACTGGTGTCA
TTCTCATTAG CCTTTTGGCT GTGGCAACAC CAGCAAATAG ACTTTATGGA TGCTTTAAGA
CTCGCAAGCT TCAATGTTAT TTCGGTCATC ACGACAACCG GTTACGGACT AACCGATTAT
CAATCGTGGG GATCTGTTGC CAGTGTCGCA TTTCTGTTTT TAATGTTTAT AGGCAGTTGT
TCAGGCTCAA CATCTGGTGG CATAAAAATA TTTCGTTTTC AAATAGCATT CTCAATTATG
CGTCAGCAGA TTAAACAGCA ATTCCACCCA AATGGAGTCT TTAAAGACAA ATACAATGGC
CACCGGATTC AAGATGATAT TGTCCGTTCA ATAATGGCGT TTTTTATGCT GATGATCGTA
GTGATATTAT TACTGTCAAT CACACTCGTA CTGACCGGAT TAGATCCGAT GACTAGCTTT
ACCGGAGCAA TAACCGCAGT GGCAAACGTA GGACCAGGCC TTGGTCCGAT TATTGGTCCT
GCAGGAAACT TTGCCCCACT TCCCGACGTC GCTAAGTGGG CTTTAGCAAT AGGAATGTTA
TTAGGGCGTT TAGAAATACT GACTGTCGCA GTGTTGTTTC ATCCTAAATT TTGGCGTTTT
TAA
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| Protein sequence | MFNVKQIIFI LGIFLSILTG FMLVPMAFAL FYGEETIGDF MLSGLFTGFI AILCIQNGRN
HHFSLNIRDM FMLTSITWFV VSLFAALPFT LYHGINYTDA FFETMSGITT TGSTVLSGLD
SMDHSILVWR SLLQWLGGIG FIVMAVAILP FLNVGGMRLF RTESSDWSDK TIPRTQHMAK
HLFLIYVALT LLCTLSYHLA GMHWFEAINH AMTTLSTGGY STSDSSMAAF SHEAHWVGIV
FMLAGGLPLL MFVQTIQQRS LRLWNDQQVK GFLRFVLLVS FSLAFWLWQH QQIDFMDALR
LASFNVISVI TTTGYGLTDY QSWGSVASVA FLFLMFIGSC SGSTSGGIKI FRFQIAFSIM
RQQIKQQFHP NGVFKDKYNG HRIQDDIVRS IMAFFMLMIV VILLLSITLV LTGLDPMTSF
TGAITAVANV GPGLGPIIGP AGNFAPLPDV AKWALAIGML LGRLEILTVA VLFHPKFWRF
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