| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0016 |
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| Symbol | |
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| ID | 4277699 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 21149 |
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| End bp | 22606 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638132754 |
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| Product | potassium uptake protein, TrkH family protein |
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| Protein accession | YP_748717 |
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| Protein GI | 114561204 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0168] Trk-type K+ transport systems, membrane components |
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| TIGRFAM ID | [TIGR00933] potassium uptake protein, TrkH family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.339355 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAATATA AAACAATTAT TAGAATCACC GGTTTGCTGA TGGGATTATT TTCAATCACC
ATGCTGCCGT CAGCATTAGT GGCTATCTTA TATAAAGATG GTGGTGGTAC TGCATTTATT
CAGGCCTTTT TTGTCAGTAT TTTTCTGGGC TTTTTATTAT GGTATCCCAA CCGCCATCAA
AAAGGCGATT TACGCACCCG AGAAGGATTC TTGATTGTAG TGTTGTTCTG GACTGTGCTT
GGATCGATAG GGGCACTGCC ATTTATTTTT TCTAATAACC CCGATTTAAG CTGGACCGAC
AGTTTTTTTG AATCGTTTTC GGCCTTAACG ACCACGGGAG CGACCGTGAT TGTTGGGCTA
GATGACTTGC CTAAGTCAAT ATTGTTCTAT CGCCATTTAC TGCAGTGGAT GGGCGGCATG
GGTATCATCG TACTTGCTGT GGCCATTTTA CCTCTGTTGG GTATTGGTGG TATGCAGCTG
TATAAAGCTG AAGTGCCTGG TCCGGTTAAA GACACTAAGG TTACTCCCCG TATAGCCGAA
ACAGCCAAAG CCTTATGGTA TATTTACTTC TTGCTTACTA CCGCTTGTGC ATTGGCATTT
TACTTTGCCG GTATGGATGC ATTTGATGCT ATTTGCCATT CATTTTCGAC TATTGCTATT
GGTGGTTTTT CGACTCACGA TGCCAGTATT GGTTACTTTC AAAGCCCGTT GATTAACGTG
ATTTGTGCGT TTTTCTTGTT GATTGCGGCA GTCAATTTTA GCTTACACTT TGCTGCATTT
ACTCGCCGTG GCATTAACGT CAAAGTATAT TTAAAAGATG CAGAATTTAA GGTGCTTATT
GCGGTGCAGC TGGTATTGAC CGCAATTTGT TTTGCTACCT TGTATCAATC TGGAATTTAC
GACTCCCCAG AGAAAACACT CGATTACGCC TTCTTTCAAG TAGTCTCGAT TTCAACAACG
GCGGGTTTTG GCACTGAAAG CTTCCATTCC TGGCCGTTGT TTTTACCTAT TCTATTAATA
TTCTCAAGCT TTATTGGTGG TTGTGCTGGC TCGACTGGCG GCGGCATGAA GGTGATTCGT
TTAATTCTAT TGGTGCTACA AGGGTCGCGT GAGCTGAAAC GACTTGTTCA TCCTAAAGCT
ATGTATTCCA TTAGAATTGG CTCGACGGCC TTACCCGACA GAATTATTGA TGCGGTATGG
GGATTCTTCT CTGCTTATGC TTTAGTGTTT GTGGTGTGTA TGGTGATTTT AATGGCAATG
GATATGGACG CCATTACTGC ATTTAGTGCA ACGGCAGCCA GTTTAAATAA CTTAGGCCCT
GGTTTGGGTG ATGTAGCATC AAATTATTCC AGTATTTCAG ACGGTGCTAA GTGGGTACTG
GTGATGGCAA TGCTATTTGG CCGATTAGAA GTGTTCACCT TATTGGTGCT ATTTACCCCC
ACATTTTGGA AGAATTAA
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| Protein sequence | MQYKTIIRIT GLLMGLFSIT MLPSALVAIL YKDGGGTAFI QAFFVSIFLG FLLWYPNRHQ
KGDLRTREGF LIVVLFWTVL GSIGALPFIF SNNPDLSWTD SFFESFSALT TTGATVIVGL
DDLPKSILFY RHLLQWMGGM GIIVLAVAIL PLLGIGGMQL YKAEVPGPVK DTKVTPRIAE
TAKALWYIYF LLTTACALAF YFAGMDAFDA ICHSFSTIAI GGFSTHDASI GYFQSPLINV
ICAFFLLIAA VNFSLHFAAF TRRGINVKVY LKDAEFKVLI AVQLVLTAIC FATLYQSGIY
DSPEKTLDYA FFQVVSISTT AGFGTESFHS WPLFLPILLI FSSFIGGCAG STGGGMKVIR
LILLVLQGSR ELKRLVHPKA MYSIRIGSTA LPDRIIDAVW GFFSAYALVF VVCMVILMAM
DMDAITAFSA TAASLNNLGP GLGDVASNYS SISDGAKWVL VMAMLFGRLE VFTLLVLFTP
TFWKN
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