| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0013 |
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| Symbol | fadB |
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| ID | 4277696 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 16763 |
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| End bp | 18913 |
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| Gene Length | 2151 bp |
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| Protein Length | 716 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638132751 |
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| Product | multifunctional fatty acid oxidation complex subunit alpha |
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| Protein accession | YP_748714 |
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| Protein GI | 114561201 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
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| TIGRFAM ID | [TIGR02437] fatty oxidation complex, alpha subunit FadB |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCTACC AAAGCCCTAC CATTCAGGTT GAGTTACTTG AAGATAATAT TGCCAAACTG
TGTTTTAACG CACAAGGTTC GGTAAATAAA TTCGACAGAG AAACAATAGC CTCTCTTGAT
GCCGCCCTAG ACAGCATCAA ACAAAATACC AATATTAAAG CCTTGCTGCT GACATCAGCA
AAAAGCACCT TTATTGTTGG CGCAGACATT ACCGAATTCT TAACGCTATT TCAGCAAGAC
GATGCCACGT TGCTAGCTTG GGTTGAACAA GCCAACGCAG TATTCAATAA GCTAGAAGAC
TTACCGTTTC CGACAGCATC AGCGATTAAC GGTTTTGCGT TAGGCGGTGG TTGCGAAACC
ATTTTAGCGA CTGACTTACG CGTTGCTGAT ACCAATGCTC GCATCGGTTT ACCAGAAACC
AAATTAGGTC TTATTCCTGG TTTTGGTGGC ACTGTGCGTT TACCTCGAGT AATCGGTGCA
GATAATGCAC TTGAGTGGAT TACCACAGCT AAAGACCAAC GCCCAGAAGA TGCGTTAAAA
GTAGGCGCTA TTGATGCCGT TGTTGCACCA GAAAACCTAG AAGCTGCTGC GATTCAAATG
TTGCATGATG CCCTTAATGG TAGCCTTGAT TGGCAAGCTC GTCGCACCAA AAAGCAATCA
CCATTACAGT TACCAAAACT TGAAGCCATG ATGTCTTTTG CTACCGCAAA AGGAATGGTG
TTTTCTGTTG CAGGCAAGCA TTATCCAGCG CCAATGGCCG CTGTGAATGT TGTTGAACAA
GCTGCAGGTT TGGACCGTGA TGGAGCATTA AAAGTAGAAG CGCTGGCGTT CATTAAATTA
GCTAAAACAG ATGTCGCACA AGCGCTAATT GGTATTTTCT TAAATGACCA GTTCGTTAAA
GGTAAAGCAA AGAAAGCCGG TAAACTCGCT AAAGATGTTA ACCAAGCAGC AGTATTGGGT
GCAGGTATTA TGGGCGGCGG CATTGCTTAC CAAAGCGCCA GCAAAGGCAC ACCAATTGTA
ATGAAAGACA TTGCTCAGCC AGCATTAGAG TTAGGCTTGA ACGAAGCGGC TAAAATTCTG
ACAACACAAG TTGCGCGCGG TCGCTCTACG CCAGAGAAAA TGGCTAAAGT ATTAAACAAC
ATCACGCCTT CACTAGATTA TGCCGCTATC AAAAATAGCG ATATCGTTGT AGAAGCGGTT
GTTGAACATC CAAAAGTTAA GGCTACTGTA CTAGCAGAAG TTGAAGGTTA CGTATCAGAA
GATGCCATTA TTGCATCAAA TACCTCGACT ATCTCAATCA ACTTACTGGC TAAAAGCCTT
AAGAAACCTG AACGTTTCTG CGGTATGCAC TTCTTTAACC CTGTGCACAA AATGCCATTA
GTTGAAATTA TCCGTGGTGA GCACAGCTCT GAAGAAACCA TCGCAACGGT AGTGGCTTAC
GCCAGCAAAA TGGGTAAAAC TCCAATCGTA GTCAATGATT GCCCCGGCTT CTTTGTTAAC
CGCGTATTGT TCCCATACTT TGCAGGCTTC AGTGGTCTAC TTGCTGAAGG TGCTGACTTT
GCTGCCGTTG ATAAAGTCAT GGAAAAACAG TTCGGTTGGC CAATGGGCCC AGCTTACTTA
CTTGACGTAG TCGGTTTAGA TACTGGTCAC CACGCCCAAG CAGTTATGGC TGAAGGCTTC
CCAGATCGCA TGGGTAAAAA TGGCAAAGAC GCTATCGACA TTATGTTTGA AAACAAACGT
CTAGGTCAGA AAAACACTAA AGGTTTCTAT GCCTATTCTG TTGACCGTCG TGGTAAGCCG
AAGAAAGACA TTGATCCAAC AAGCTATGAA TTATTAAGCG CTGAGTTCGG TGAATTAAAG
GCATTCGAGT CTGATGACAT CATCGCTCGC TGTATGATCC CGATGATCAT CGAAACGGTT
CGTTGTTTAG AAGAAGGCAT TATTGCATCA CCTGCTGAAG GCGATATGGG TCTAGTTTAC
GGTATTGGTT TCCCTCCATT CCGTGGCGGT GTATTCCGTT ACTTAGACAC CATGGGCGTA
GCAAACTTTG TTGCCCTAGC AGACAAATAC GCACATCTTG GTGGCTTATA TCAGGTTACC
GATGCAATGC GTGCACTTGC AGCCAACAAT GGTAGTTACT ACCAAGCCTA A
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| Protein sequence | MIYQSPTIQV ELLEDNIAKL CFNAQGSVNK FDRETIASLD AALDSIKQNT NIKALLLTSA
KSTFIVGADI TEFLTLFQQD DATLLAWVEQ ANAVFNKLED LPFPTASAIN GFALGGGCET
ILATDLRVAD TNARIGLPET KLGLIPGFGG TVRLPRVIGA DNALEWITTA KDQRPEDALK
VGAIDAVVAP ENLEAAAIQM LHDALNGSLD WQARRTKKQS PLQLPKLEAM MSFATAKGMV
FSVAGKHYPA PMAAVNVVEQ AAGLDRDGAL KVEALAFIKL AKTDVAQALI GIFLNDQFVK
GKAKKAGKLA KDVNQAAVLG AGIMGGGIAY QSASKGTPIV MKDIAQPALE LGLNEAAKIL
TTQVARGRST PEKMAKVLNN ITPSLDYAAI KNSDIVVEAV VEHPKVKATV LAEVEGYVSE
DAIIASNTST ISINLLAKSL KKPERFCGMH FFNPVHKMPL VEIIRGEHSS EETIATVVAY
ASKMGKTPIV VNDCPGFFVN RVLFPYFAGF SGLLAEGADF AAVDKVMEKQ FGWPMGPAYL
LDVVGLDTGH HAQAVMAEGF PDRMGKNGKD AIDIMFENKR LGQKNTKGFY AYSVDRRGKP
KKDIDPTSYE LLSAEFGELK AFESDDIIAR CMIPMIIETV RCLEEGIIAS PAEGDMGLVY
GIGFPPFRGG VFRYLDTMGV ANFVALADKY AHLGGLYQVT DAMRALAANN GSYYQA
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