| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0006 |
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| Symbol | glyS |
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| ID | 4277689 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 7422 |
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| End bp | 9506 |
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| Gene Length | 2085 bp |
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| Protein Length | 694 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638132744 |
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| Product | glycyl-tRNA synthetase subunit beta |
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| Protein accession | YP_748707 |
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| Protein GI | 114561194 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0751] Glycyl-tRNA synthetase, beta subunit |
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| TIGRFAM ID | [TIGR00211] glycyl-tRNA synthetase, tetrameric type, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTTG AAAACTTACT CATTGAAGTT GGTACCGAAG AATTACCACC AAAAGCGCTG
CGCACGTTAG CTGAATCATT TTTAACGAGC TTTACTGATG AATTAACTAA AGCTGATTTA
CCTTTTGAGT CTGCAGTTTG GTATGCAGCC CCTCGCCGCT TAGCGATTAA TGTATTGGGT
CTAGCATTAG CACAAGCCGA TAAAGTCGTT GAAAAACGCG GCCCCGCGGT TAGCTCAGCA
TTTGATGCTG ACGGTAACCC AACGAAAGCA GCACAAGGCT GGGCTCGTGG TAACGGTATT
ACGGTTGAGC AAGCAGAGCG ATTAGTCACC GATAAAGGTG AATGGTTAGT CCATCAAGCT
AAAGTGGTTG GCGTTGAAAC CAAAAGCTTA ATAGCTGACA TGGCACAGCG CGCACTCGAT
AAGTTACCAA TCCCTAAGCC AATGCGTTGG GGTAACAACA AAACTCAGTT TATTCGCCCA
GTCCACACAG TGACAATGTT ATTAGGTAGC GAATTAGTTG CTGGTGAATT ACTTGGTATT
ACATCTAACC GCATTATTCG TGGCCACCGC TTTATGGGTA AAGCCAGCTT TGAGTTGGAT
CATGCTGACA ATTATTTAGC CGCGCTAAAA GAGCAAGGTA AAGTTCTAGC AGATTATGAA
TTACGTAAAT CGCTAATCAA AGCTGATGCT GAAGCAGCTG CAGCAAAATT AGGTGGTATT
GCCGATATTC AAGATGGACT ACTTGAAGAA GTCGCTTCTC TAGTTGAATG GCCAATAGTG
TTAACAGCAA GCTTTGAAGA AAAGTTTTTA AACGTACCTT CTGAAGCGTT GGTTTACACC
ATGAAAGGTG ACCAAAAATA CTTCCCAGTA TTTGATAAAG CCGGCAAATT ACTGCCTAAC
TTTATCTTTG TCACCAACAT TGAATCTAAA GATCCACAAC AGATTATTTC AGGTAACGAA
AAAGTAGTTC GCCCACGTTT AGCGGATGCT GAGTTCTTCT TTAATACCGA TAAAAAGAAC
ACACTTGAAT CTCGTATTGC CAGTTTAGAA ACGGTTGTAT TCCAAAAACA ACTTGGTACG
TTGAAAGCGC GTGTTGAACG TATTTCTGAG TTAGCAGGTT TCATTGCGAC GCAAATGAAC
AACAACGGTG TTGAGACCAA CAGTGTAGAT GCTAGCCGTG CTGGTTTATT GTCTAAAACA
GACCTAATGA CCAACATGGT CATGGAATTT ACTGATACTC AAGGCACTAT GGGCATGCAT
TACGCCCGCC TAGATGGCGA AACAGAAGCT GTTGCTATCG CACTTGAAGA ACAGTACAAA
CCTAAATTTT CTGGTGATAC AGTACCAACG GCTACAGTGT CGTGTGCGGT TGCTTTAGCT
GAAAAATTAG ATACGCTAGT GGGTATTTTT GGTATTGGTC AAGCACCAAA AGGTGCGGCA
GACCCATTTG CACTTCGCCG CGCAGCCATT GGTATTTTGC GCGTTATTGT AGAAAACAAA
CTGCCACTGG ACTTGGTTGA GTTAATTGCT AAAGCACAAG CTTTGCATGC GACTAATATT
ACTAACACCA ATACCAGTGA TGATGTGCTT GAATTCCTTC TCGCACGTTT CCGAGCTTGG
TACCAAGATA AAGGCATTCA AGTTGATGTT ATTTTAGCTG TACTGGCTCG TCGTCCAACA
AAACCTGCTG ATTTTGACAG TCGTGTTAAA GCTGTATCAC ATTTCCGTGG CTTAGAAGCT
TCTACAGCGC TAGCAGCGGC AAATAAGCGT GTTTCTAATA TATTGGCTAA AGTTGAAGGC
GAATTACCCG CAACCATCAA TTCAGCTCTA TTAACAGAAC CAGCAGAGAA AGCGTTAGCT
GATAAGCTTG TACAGTTACA ACCACAGTTA GCTCCACTGT TTGCTGATGG CAATTACCAA
CAAGCATTAA CGCTATTGGC TGACTTACGC GAAAATGTCG ATCAGTTCTT TGAAGATGTG
ATGGTAATGG CAGATGATGA AGCATTGAAA AATAACCGCT TAGCGTTATT AACCAATCTT
CGTGAGCAGT TCTTGCACGT TGCAGACATT TCGTTGCTGC AATAA
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| Protein sequence | MNFENLLIEV GTEELPPKAL RTLAESFLTS FTDELTKADL PFESAVWYAA PRRLAINVLG
LALAQADKVV EKRGPAVSSA FDADGNPTKA AQGWARGNGI TVEQAERLVT DKGEWLVHQA
KVVGVETKSL IADMAQRALD KLPIPKPMRW GNNKTQFIRP VHTVTMLLGS ELVAGELLGI
TSNRIIRGHR FMGKASFELD HADNYLAALK EQGKVLADYE LRKSLIKADA EAAAAKLGGI
ADIQDGLLEE VASLVEWPIV LTASFEEKFL NVPSEALVYT MKGDQKYFPV FDKAGKLLPN
FIFVTNIESK DPQQIISGNE KVVRPRLADA EFFFNTDKKN TLESRIASLE TVVFQKQLGT
LKARVERISE LAGFIATQMN NNGVETNSVD ASRAGLLSKT DLMTNMVMEF TDTQGTMGMH
YARLDGETEA VAIALEEQYK PKFSGDTVPT ATVSCAVALA EKLDTLVGIF GIGQAPKGAA
DPFALRRAAI GILRVIVENK LPLDLVELIA KAQALHATNI TNTNTSDDVL EFLLARFRAW
YQDKGIQVDV ILAVLARRPT KPADFDSRVK AVSHFRGLEA STALAAANKR VSNILAKVEG
ELPATINSAL LTEPAEKALA DKLVQLQPQL APLFADGNYQ QALTLLADLR ENVDQFFEDV
MVMADDEALK NNRLALLTNL REQFLHVADI SLLQ
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