| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0003 |
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| Symbol | recF |
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| ID | 4277686 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2617 |
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| End bp | 3699 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638132741 |
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| Product | recombination protein F |
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| Protein accession | YP_748704 |
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| Protein GI | 114561191 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1195] Recombinational DNA repair ATPase (RecF pathway) |
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| TIGRFAM ID | [TIGR00611] recF protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000366734 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTTAT CACGCATTAA CATTGGTTCA TTTCGTAATA TTACCTCTGC TTCATTACAG
CCTTGTGATG GCTTAAATTT GATTTACGGT CAAAATGGCA GTGGCAAAAC CAGTATTCTT
GAAGCGATTT ACTTCTTGGG AATGGGGCGT TCGTTTCGCA GCCATTTATC CCAACGAGTG
ATCAATAATG ATGATGATAA ACTGACCTTA TTTGCGCATT TAATTGATGC AGATAGAGAT
TGTAAAATTG GCTTACGTCG TCATCGAAGT GGTGAGATCG AAGTAAAAAT TGATGGCGAG
AAAGTGAAGC GTTTATCAAC CCTGGCCGAA ACATTACCCA TTCAAGTTAT TACTCCCGAA
AGTTTTTCTT TATTGTTCGA GGGACCTAAA GCCCGCCGTC AATTTATCGA TTGGGGTGCA
TTTCATTCTG ATCCACATTT TTATCAAGCT TGGGTGAATA CTCGAAAGGT ATTAAAGCAA
CGAAACCAAT TACTTAGAAA TCAATCTTCC TATAACCAAA TACAGTTTTG GGATAAGGAG
TTGGTGCGGT ATGCTGAACA GGTTACCGAT ATACGAAATC AATATGTAGA CTCGTTAAAT
GTGCTACTAA AGGGTATAAT CGGAGTGTTT TTACCTCGGA TTGATATTAA GGTTTCTTTT
ACTCGAGGAT GGGATAGTAA AACGGATTTT GCCCAATTAC TTGAAAACCA ATACTCAAGA
GATTTAGCCG CTGGAAATAC GGGCAGCGGC CCCCATAAAG CAGACTTACG TTTGCGTGTG
GGTAATTTGC CAGCGCAGGA TGCGTTGTCC CGTGGACAAT TAAAATTATT AGTCTGTGCA
CTGCGTATTG CACAGGGAAA GTTGCTCAAA CAACAACTAG ATAAAAATAG TATTTATCTA
GTCGACGATT TACCGTCGGA GTTGGATGCA CAGCATAGGC AGCTATTGCT ACAGCTGTTA
ACCGAAACCG GTGCACAAAT TTTTGTCACT GCGATCGATC CGCAAGCAAT AGTCGATTCG
TTATCTAGCC CTCCAAACAG GATGTTTCAT GTGGAACAAG GGCTGGTAAC GGTTATTGAA
TAA
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| Protein sequence | MSLSRINIGS FRNITSASLQ PCDGLNLIYG QNGSGKTSIL EAIYFLGMGR SFRSHLSQRV
INNDDDKLTL FAHLIDADRD CKIGLRRHRS GEIEVKIDGE KVKRLSTLAE TLPIQVITPE
SFSLLFEGPK ARRQFIDWGA FHSDPHFYQA WVNTRKVLKQ RNQLLRNQSS YNQIQFWDKE
LVRYAEQVTD IRNQYVDSLN VLLKGIIGVF LPRIDIKVSF TRGWDSKTDF AQLLENQYSR
DLAAGNTGSG PHKADLRLRV GNLPAQDALS RGQLKLLVCA LRIAQGKLLK QQLDKNSIYL
VDDLPSELDA QHRQLLLQLL TETGAQIFVT AIDPQAIVDS LSSPPNRMFH VEQGLVTVIE
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