| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A4671 |
|---|
| Symbol | cpdB |
|---|
| ID | 6515485 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011094 |
|---|
| Strand | - |
|---|
| Start bp | 4538506 |
|---|
| End bp | 4540449 |
|---|
| Gene Length | 1944 bp |
|---|
| Protein Length | 647 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642749609 |
|---|
| Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein |
|---|
| Protein accession | YP_002117342 |
|---|
| Protein GI | 194735700 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
|---|
| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTAAGT TTAGTGCAAC GCTTCTGGCT ACGCTGATCG CCGCCAGCGT GAATGCGGCC
ACCGTCGATC TCCGTATCAT GGAAACTACT GATTTACATA GCAACATGAT GGATTTCGAT
TATTACAAGG ATACCGCAAC CGAAAAATTC GGATTGGTAC GTACCGCAAG TTTGATTCAT
GCCGCCCGAA ATGAAGTCAA AAACAGCGTG CTGGTGGATA ACGGCGACCT GATTCAGGGG
AGCCCTCTGG GCGATTATAT GGCGGCAAAA GGGCTCAAAG ACGGTGATGT TCACCCGGTC
TATAAAGCGC TCAACACTCT GGATTACGCG GTTGGAAACC TCGGCAACCA TGAGTTTAAT
TATGGTCTGG ACTATCTGCA TAACGCGCTG GCCGGCGCGA AATTCCCTTA TGTTAACGCC
AATATTATCG ACGTTAAAAC CCAAAAGCCG CTCTTTACGC CTTATCTGAT TAAAGAGACG
AGCGTTATTG ATAAAGACGG CCACCCGCAA ACTCTGAAAA TCGGCTATAT CGGCTTTGTT
CCGCCGCAAA TCATGATTTG GGATAAAGCG AATCTGAGCG GCAAAGTTAC CGTCAATGAC
ATTACGGAAA CCGCCCGGAA ATATGTGCCC GAAATGCGCG AGAAAGGCGC AGATATCGTG
GTAGTCATTG CTCACTCAGG CCTTTCTGCC GATCCGTACC ACAGCATGGC GGAAAACTCG
GTTTATTACC TCAGCGAAGT TCCCGGCGTT GACGCGATTA TGTTTGGTCA CGCCCACGCC
GTCTTCCCCG GTAAAGATTT TGCCGACATC AAAGGCGCGG ATATCGCCAA AGGTACGCTT
AACGGCATTC CTGCGGTAAT GCCTGGCATG TGGGGCGACC ATCTGGGAGT GGTCGATCTG
GTGCTCAACA ACGACAACGG CAAATGGCAG GTTACGCAGG CGAAAGCGGA AGCGCGGCCT
ATTTACGACG CCGCCGCTAA AAAGTCGCTG GCGGCGGAAG ACAGTAAGCT GGTCGGTATT
CTGAAAGCCG ATCACGATGC CACCCGCGAG TTTGTCAGCA AGCCCATCGG TAAATCCGCC
GATAATATGT ACAGTTATCT TGCTCTGGTG CAGGACGATC CTACCGTACA GGTGGTGAAT
AACGCGCAAA AAGCGTATGT GGAACACTTT ATTCAGGGCG ATCCGGATCT GGCGAAACTG
CCGGTGCTGT CCGCCGCCGC GCCGTTTAAA GTTGGCGGGC GTAAGAACGA TCCTGCCAGC
TTTGTCGAGG TGGAAAAAGG CCAGTTGACC TTCCGTAACG CCGCCGATCT TTATCTCTAT
CCGAATACGC TGGTGGTGGT GAAAGCCAGC GGCAAGGAGG TAAAAGAGTG GCTGGAATGT
TCTGCCGGAC AATTTAATCA GATTGATATT CATAGCAACA AACCGCAATC GTTGATCAAT
TGGGATGGCT TTCGCACCTA TAATTTCGAT GTCATTGACG GCGTGAATTA TCAAATCGAT
GTGTCACAGC CCGCCCGCTA TGATGGCGAA TGTCAGATGG TGAATCCGCA GGCGGAACGT
ATTAAAAACC TGACCTTTAA CGGTAAGCCT GTCGACCCGA ACGCTACGTT CCTGGTCGCC
ACGAATAACT ATCGCGCTTA CGGCGGCAAG TTTGCCGGCA CGGGCGACAG CCATATCGCC
TTTGCGTCTC CGGATGAAAA TCGCGCCGTG CTGGCGGCAT GGATTGGCGC AGAGTCAAAA
CGCGCGGGCG AAATCCATCC GGCGGCGGAT AATAACTGGC GTCTGGCGCC AATCCACAGC
AATACGGCGC TGGATATCCG CTTTGAAACA TCGCCAGGCG ATAAAGCCGC TGCCTTCATT
AAAGCGAAAG GACAGTATCC GATGAAGAAG GTTGCCGTCG ATGATATTGG TTTTGCCATT
TATCAGGTGG ATTTGAGCAA GTAA
|
|---|
| Protein sequence | MIKFSATLLA TLIAASVNAA TVDLRIMETT DLHSNMMDFD YYKDTATEKF GLVRTASLIH
AARNEVKNSV LVDNGDLIQG SPLGDYMAAK GLKDGDVHPV YKALNTLDYA VGNLGNHEFN
YGLDYLHNAL AGAKFPYVNA NIIDVKTQKP LFTPYLIKET SVIDKDGHPQ TLKIGYIGFV
PPQIMIWDKA NLSGKVTVND ITETARKYVP EMREKGADIV VVIAHSGLSA DPYHSMAENS
VYYLSEVPGV DAIMFGHAHA VFPGKDFADI KGADIAKGTL NGIPAVMPGM WGDHLGVVDL
VLNNDNGKWQ VTQAKAEARP IYDAAAKKSL AAEDSKLVGI LKADHDATRE FVSKPIGKSA
DNMYSYLALV QDDPTVQVVN NAQKAYVEHF IQGDPDLAKL PVLSAAAPFK VGGRKNDPAS
FVEVEKGQLT FRNAADLYLY PNTLVVVKAS GKEVKEWLEC SAGQFNQIDI HSNKPQSLIN
WDGFRTYNFD VIDGVNYQID VSQPARYDGE CQMVNPQAER IKNLTFNGKP VDPNATFLVA
TNNYRAYGGK FAGTGDSHIA FASPDENRAV LAAWIGAESK RAGEIHPAAD NNWRLAPIHS
NTALDIRFET SPGDKAAAFI KAKGQYPMKK VAVDDIGFAI YQVDLSK
|
|---|
| |