Gene SeSA_A3935 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A3935 
Symbol 
ID6518474 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand+ 
Start bp3804662 
End bp3805924 
Gene Length1263 bp 
Protein Length420 aa 
Translation table11 
GC content49% 
IMG OID642748907 
Productsite-specific recombinase, phage integrase family 
Protein accessionYP_002116670 
Protein GI194736776 
COG category[L] Replication, recombination and repair 
COG ID[COG0582] Integrase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.191126 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones3 
Fosmid unclonability p-value0.00000299734 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGTCAAAAC TGACAGACTT ACAAATCAGA GCATGGATAA AATCGGGTGA GCATTTTGCT 
GGTCGCTCTG ATGGGGGTGG GCTGTATTTG TGCTTCCCAG AAAATTACTC AGTACCCTTT 
TGGCGTTTGC GTTATCGTTT TGCGGGCAAA CAGCGATCGC TGGTCATAGG CACGTACACC 
GAGCTGTCAC TCGCTAAAGC ACGAGCAAAA GCTAAAGAAC AGTCAGCACG GGTTGCATTG 
GGTTATGACG TTGCGGGGGA AAAGCAAGAA CGCAAAGCTG AAGCGCTGAG GAAGATGGAG 
GATGAAAAGC ACGCGCTACG TGTTTCAGAA CTTGCAGCTG AATACTTTGA ACGCCAGATT 
CTCAATCGGT GGAAGCATCC AGACATCCTA CGTCGTCGCA TAGATAAGGA CATTAATCCG 
GCAATCGGTC GCCTCAGAAT TGAAGAGGTT AAAGCCAGGG ATATTGATGA CATGCTGCAA 
AAAATAGTTC AGCGTGGTGC ACCTACAGTC GCTAACGATG TGCTCAGATG GACTCGTCGT 
ATCTTCGATT ACGGGATAAG ACGGCATATG CTAGAAACGA ATCCTACTAG TGCTTTTGAA 
ATTGATGATG CAGGTGGGCA GGAAAAAAGC AGGGAACGCT GGCTAAGCCG AGAAGAGCTT 
GCGCGATTCT TACAGGCAAT GCCGATGACA AAAGGTTTCT CACGTCAGAA CGAACTGACA 
ATGAAACTTC TGCTGGTGTT TTGCTGCCGC AAGATGGAGC TTTGCGGTGC TCGTTGGGAA 
GAGTTCGATT TTAATGAAGC AGTTTGGCGC TTACCCGCAG AGCGGGTAAA GAATGGCGAT 
GCGATTGATA TACCTATCCC GGCAGTAGCT CTTGAATGGC TGAAGGAACT GCATCAAATG 
TCCTGCAATA GCCAGTGGGT GCTGCCAGCA AGAAAGATGC AGCACCGGAT GATTCCTCAC 
ATTCAGGAAA GTACACTCCC CGTAGCATTG AGCAAGGTGA AGGGTAACCT CCCCGACGTA 
CCTAATTTTA CTATTCATGA TTTTCGACGT ACCGCGCGAT CGCACCTGGC TGCATTAGGG 
ATTGATCCAG TAGTTGCAGA ACGCTGCCTG AACCACAGAA TCAAAGGTGT TGAGGGGATA 
TACAACCGTT ATCAGTATTT CGATGAGAGG AAGCAGGCGT TGGAGCTGTG GGCTGACTTG 
CTGGTTTCTT TAGAAAGAGG TGAAGGCTAT AACGTGACGC CGTTGAGAAA GGGGATTGCA 
TGA
 
Protein sequence
MSKLTDLQIR AWIKSGEHFA GRSDGGGLYL CFPENYSVPF WRLRYRFAGK QRSLVIGTYT 
ELSLAKARAK AKEQSARVAL GYDVAGEKQE RKAEALRKME DEKHALRVSE LAAEYFERQI 
LNRWKHPDIL RRRIDKDINP AIGRLRIEEV KARDIDDMLQ KIVQRGAPTV ANDVLRWTRR 
IFDYGIRRHM LETNPTSAFE IDDAGGQEKS RERWLSREEL ARFLQAMPMT KGFSRQNELT 
MKLLLVFCCR KMELCGARWE EFDFNEAVWR LPAERVKNGD AIDIPIPAVA LEWLKELHQM 
SCNSQWVLPA RKMQHRMIPH IQESTLPVAL SKVKGNLPDV PNFTIHDFRR TARSHLAALG 
IDPVVAERCL NHRIKGVEGI YNRYQYFDER KQALELWADL LVSLERGEGY NVTPLRKGIA