Gene SeSA_A3028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A3028 
Symbol 
ID6518070 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand+ 
Start bp2925042 
End bp2925971 
Gene Length930 bp 
Protein Length309 aa 
Translation table11 
GC content41% 
IMG OID642748051 
Producttranscriptional regulator HilD 
Protein accessionYP_002115828 
Protein GI194736023 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.0000980796 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0102842 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAAATG TAACCTTTGT AAGTAATAGT CATCAGCGTC CTGCCGCAGA TAACTTACAG 
AAATTAAAAT CACTTTTGAC AAATACCCGG CAGCAAATTA AAAGTCAGAC TCAGCAGGTT 
ACCATCAAAA ATCTTTATGT AAGCAGTTTC ACTTTAGTTT GCTTTCGGAG CGGTAAACTG 
ACGATTAGCA ATAATCACGA TACGATTTAC TGTGACGAAC CTGGGATGTT GGTGCTCAAA 
AAAGAGCAGG TAGTTAACGT GACGCTTGAA GAGGTCAATG GCCACATGGA TTTCGATATA 
CTCGAGATAC CGACGCAACG ACTTGGCGCT CTCTATGCAC TTATCCCAAA CGAGCAGCAA 
ACAAAAATGG CGGTACCCAC AGAGAAAGCG CAGAAAATCT TCTATACGCC TGACTTTCCT 
GCCAGAAGAG AGGTATTTGA ACATCTGAAA ACGGCGTTCT CCTGTACGAA GGATACAAGC 
AAAGGTTGCA GTAACTGTAA CAACAAGAGT TGTATTGAAA ATGAAGAGTT AATTCCTTAT 
TTTCTGCTGT TCCTGCTTAC TGCTTTTCTC CGACTCCCGG AGAGTTATGA GATCATCCTT 
AGCTCGGCTC AGATAACGTT AAAGGAGCGC GTTTACAACA TTATATCTTC GTCACCCAGT 
AGACAGTGGA AGCTTACGGA TGTTGCCGAT CATATATTTA TGAGTACGTC AACGCTCAAA 
CGGAAACTTG CAGAAGAAGG TACCAGCTTT AGCGACATCT ACTTATCGGC AAGAATGAAT 
CAGGCAGCAA AACTTTTACG CATAGGCAAC CATAATGTTA ATGCTGTAGC ATTAAAATGT 
GGTTATGACA GCACGTCCTA CTTCATTCAA TGTTTCAAAA AATATTTTAA AACTACGCCA 
TCGACATTCA TAAAAATGGC GAACCATTAA
 
Protein sequence
MENVTFVSNS HQRPAADNLQ KLKSLLTNTR QQIKSQTQQV TIKNLYVSSF TLVCFRSGKL 
TISNNHDTIY CDEPGMLVLK KEQVVNVTLE EVNGHMDFDI LEIPTQRLGA LYALIPNEQQ 
TKMAVPTEKA QKIFYTPDFP ARREVFEHLK TAFSCTKDTS KGCSNCNNKS CIENEELIPY 
FLLFLLTAFL RLPESYEIIL SSAQITLKER VYNIISSSPS RQWKLTDVAD HIFMSTSTLK 
RKLAEEGTSF SDIYLSARMN QAAKLLRIGN HNVNAVALKC GYDSTSYFIQ CFKKYFKTTP 
STFIKMANH