Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeSA_A2858 |
Symbol | rluD |
ID | 6516785 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
Kingdom | Bacteria |
Replicon accession | NC_011094 |
Strand | - |
Start bp | 2758211 |
End bp | 2759191 |
Gene Length | 981 bp |
Protein Length | 326 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642747891 |
Product | 23S rRNA pseudouridine synthase D |
Protein accession | YP_002115673 |
Protein GI | 194737121 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0524542 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCACAAC GAGTACAACT CACCGCAACG GTCTCCGAAA ACCAACTCGG TCAACGCTTA GATCAGGCTT TGGCCGAAAT GTTCCCGGAT TATTCACGTT CGCGTATAAA AGAATGGATT TTGAATCAGC GCGTGTTGGT CAATGGTCAA CTTTGCGATA AGCCAAAAGA AAAAGTGTTA GGCGGCGAGC GGGTGGCTAT TGATGCGGAG ATCGACGAAG AGATTCGTTT TGAAGCGCAG GATATCCCGT TAGATATTGT TTATGAAGAT GACGATATTC TGGTTATCAA CAAACCACGC GATCTGGTGG TACATCCTGG CGCGGGTAAC CCGGACGGTA CGGTACTGAA CGCGTTGCTA CATTATTATC CGCCGATTGC GGATGTTCCG CGCGCGGGCA TTGTGCATCG TCTGGATAAG GACACGACGG GGCTGATGGT GGTGGCCAAA ACCGTTCCGG CGCAAACGCG CCTGGTGGAG TCTTTGCAGC TGCGCGAGAT CACCCGCGAA TATGAAGCGG TCGCGATCGG ACATATGACG GCGGGAGGAA CGGTGAATGA ACCCATCAGT CGTCACCCGA CCAAACGTAC CCATATGTCG GTGCATCCCA TGGGCAAACC GGCGGTGACC CACTACCGCA TTATGGAACA TTTCCGTGTG CACACGCGTC TTAGGCTGCG TCTGGAGACC GGGCGTACGC ACCAGATCCG CGTGCATATG GCGCATATTA CGCACCCGTT AGTGGGCGAT CAGGTCTACG GTGGTCGTCC ACGTCCACCG AAAGGCGCAT CGGAAGAGTT TATTTCCACG TTGCGTAAGT TTGACCGCCA GGCGCTTCAT GCAACGATGC TGCGTCTCTA CCATCCTGTA TCGGGTATCG AAATGGAGTG GCACGCGCCG ATTCCACAAG ATATGGTGGA CCTTATCGAT GCGATGCGCG CCGATTTCGA AGATCATAAA GATGATGTGG ACTGGTTATG A
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Protein sequence | MAQRVQLTAT VSENQLGQRL DQALAEMFPD YSRSRIKEWI LNQRVLVNGQ LCDKPKEKVL GGERVAIDAE IDEEIRFEAQ DIPLDIVYED DDILVINKPR DLVVHPGAGN PDGTVLNALL HYYPPIADVP RAGIVHRLDK DTTGLMVVAK TVPAQTRLVE SLQLREITRE YEAVAIGHMT AGGTVNEPIS RHPTKRTHMS VHPMGKPAVT HYRIMEHFRV HTRLRLRLET GRTHQIRVHM AHITHPLVGD QVYGGRPRPP KGASEEFIST LRKFDRQALH ATMLRLYHPV SGIEMEWHAP IPQDMVDLID AMRADFEDHK DDVDWL
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