| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A1824 |
|---|
| Symbol | |
|---|
| ID | 6517383 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011094 |
|---|
| Strand | + |
|---|
| Start bp | 1764553 |
|---|
| End bp | 1765545 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642746922 |
|---|
| Product | peptide transport system ATP-binding protein SapD |
|---|
| Protein accession | YP_002114725 |
|---|
| Protein GI | 194735415 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG4170] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00345861 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCGTTAC TGGATATCCG CAATCTCACC ATTGAATTTA AAACCAGCGA AGGTTGGGTA
AAAGCGGTCG ATCGCGTCAG TATGACATTA AGCGAAGGCG AAATTCGCGG CCTGGTAGGT
GAATCGGGTT CCGGAAAGAG CTTGATTGCT AAAGCTATTT GCGGCGTCGC GAAAGACAAC
TGGCGAGTCA CTGCCGACCG TATGCGTTTT GATGATATCG ATCTGCTGCG CCTCTCCTCT
CGTGAACGGC GTAAGCTGGT CGGGCATAAT GTGTCGATGA TCTTCCAGGA GCCGCAGTCG
TGCCTTGATC CTTCCGAACG CGTCGGCCGC CAGCTAATGC AAAATATTCC CGCCTGGACC
TATAAAGGCC GCTGGTGGCA GCGTTTAGGC TGGCGTAAAC GGCGTGCTAT TGAATTACTG
CACCGGGTGG GAATTAAAGA TCATAAAGAC GCGATGCGCA GTTTTCCCTA TGAACTGACC
GATGGCGAGT GTCAGAAAGT CATGATCGCT ATCGCGCTGG CGAATCAACC GCGACTCCTG
ATCGCTGATG AACCCACCAA CTCAATGGAA CCGACGACGC AGGCGCAAAT TTTTCGCCTG
CTGACCCGAC TGAATCAAAA CAGTAATACC ACCATTCTGT TGATTAGCCA CGACCTGCAA
ATGCTGAGTC AGTGGGCTGA CAAAATCAAC GTTTTATACT GCGGCCAGAC GGTAGAAACC
GCGCCAAGTA AAGATCTGGT GACGACGCCA CATCATCCTT ATACGCAGGC GCTTATCCGC
GCGATTCCGG ATTTTGGCAG TGCGATGCCG CATAAAAGCC GTCTGAATAC GCTGCCGGGC
GCGATCCCGC TACTGGAGCA GTTACCGATA GGTTGTCGTC TGGGGCCGCG CTGCCCTTAC
GCGCAACGAG AATGCATTAT CACGCCACGC TTAACCGGCG CGAAAAATCA TCTCTATGCC
TGTCATTTTC CGCTGAATAT GGAGAGAGAG TGA
|
|---|
| Protein sequence | MPLLDIRNLT IEFKTSEGWV KAVDRVSMTL SEGEIRGLVG ESGSGKSLIA KAICGVAKDN
WRVTADRMRF DDIDLLRLSS RERRKLVGHN VSMIFQEPQS CLDPSERVGR QLMQNIPAWT
YKGRWWQRLG WRKRRAIELL HRVGIKDHKD AMRSFPYELT DGECQKVMIA IALANQPRLL
IADEPTNSME PTTQAQIFRL LTRLNQNSNT TILLISHDLQ MLSQWADKIN VLYCGQTVET
APSKDLVTTP HHPYTQALIR AIPDFGSAMP HKSRLNTLPG AIPLLEQLPI GCRLGPRCPY
AQRECIITPR LTGAKNHLYA CHFPLNMERE
|
|---|
| |