| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeSA_A1271 |
|---|
| Symbol | |
|---|
| ID | 6518727 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011094 |
|---|
| Strand | - |
|---|
| Start bp | 1242158 |
|---|
| End bp | 1244713 |
|---|
| Gene Length | 2556 bp |
|---|
| Protein Length | 851 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642746392 |
|---|
| Product | outer membrane usher protein SfmD |
|---|
| Protein accession | YP_002114200 |
|---|
| Protein GI | 194737765 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3188] P pilus assembly protein, porin PapC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.396185 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCAG ACGCATACAA AAAAATAATG ACGCTCAGTC GAATCGCCTG CTTTATCGCC
CTGCAGTGCG CACTGCCAGC CGGTAACACT GCGTTTGCCC GCGAATATTT TAACCCAGCG
CTGCTGGGGA TCGACGGGCC GGGAAAAGAG CTTACCGATC TTTCCGCTTT TGAAGAAGGC
ATCGGCCAAA TGCCTGGCAC CTATCGCGTT GACGTCATTG TGAATAAATC GTCCGCTGGC
GTGCATGACG TTAATTTTGT TATGCAAAAA GATACGGCAG GCAACACCAC TCTGCAGCCC
TGCTTCAGCG TTGACTCGCT GCGCGAGTTC GGTATTCGTA CCGACGCGTT TCCAAATCTT
GCTGGTCACG GCGACTGCGC TAACCTGGCG GCGATCCCGC AGGCCAGCGC CGAGTTCGCC
TTTGAACGCC AGCAGCTACG GCTGTCTATT CCGCAGGCCG CCGTAGACAG CCATGCCCGC
GGCTACGTCG CCCCGGAACG GCTCGATGAG GGCATTAACG CCCTGCTGCT CAACTATAGC
TTTTCCGGCG CCAACACCGA AGCGCGCCGC GGCGATATGA CCGACTCCGA CAGCTATTAT
CTGAGCCTGC GTCCGGGCCT GAATATTGGC CCCTGGCGCA TTCGCAACTA CAGCACCTGG
AATCGCAACG TCAACGGCGA TAGCGCCGAT GAAAGCTGGG ATTCGCTCTA CACCTACGCC
CAACGCAATA TTATCGCGCT GAAAAGTCAG CTAACATTCG GCGACAGCAC CGCGCCCTCC
GAGCTGTTTG ATAGTGTGCC GTTCCGCGGC GCACAGCTGG CCTCCGACGA TGATATGTTG
CCCGATAGCC TGCGTGGCTA CGCGCCGGTG GTGCGCGGCA TCGCCCGTAC TAACGCGCAG
GTAATTATCA AACAGAATGG TTACACCATT TATCAAAGCT ATGTTTCGCC GGGCGCATTT
GAGATTACCG ATATGTACCC AACCGGCAGC AGCGGCGATC TTGACGTCAC AATTAAAGAG
GCCGACGGTA GCGAACAGCA TCAGACGGTG GCCTTCGCCT CTCTGCCTAT TCTGCAGCGC
GAAGGGCGGC TGAAGTACAG CGTGACCAGC GGCCAGTATC GCCCCTATGA GAGCGATATT
GACAAAAAAA TGTTTACCCA GGCCACCCTG ATTTATGGCC TGCCAGCCGG GTTTACGGTA
TATGGCGGGG GCCAGTTCTC ACAGCACTAC AAGTCCCTGC TCACCGGGCT TGGAAAAAAC
CTCGGCGAGT TGGGTGCCGT CTCGGTGGAT GGCACTCAGG CATGGTCAAC GCAAAAAGAT
CAGGATAAAG AGAGCGGCCA GTCCTGGCGC ATCCGTTACA GTAAAAATAT TCTCGAAACC
GGCACCAATA TATCCATTTC CGGTTATAGG TATTCAACAT CAGGTTATTA CACTCTCCCG
GAAGTACTGG ATACCTGGCG TGACGACGAG TCGCAAAATA ATAACGACCG CCGCCGCAAC
CGTGCTGAAC TTCAGCTTAA CCAGAGTATC GGGGCGAGTC TGGGGTCACT GTCGCTCAAT
GCTATTAGCG AAGATTACTG GAACAGTGAC CGGAAGATGC GCTCTCTCGG TGTGGGTTAC
AGTAATAGCT GGGGCGGCGT GACGTACAAC ATCAATTACA GCTATAACCG CAATACCACC
GACAGTGACG ATAGCGACAA AATCTACGAT GAAGATCAGG TCTTCTCACT GAGCATAAAC
ATCCCGCTCG ACCGCTGGTT AAGTCACAGT TACGCCACCT ACAACCTGAA TACTAGCAAA
CGGGGCAATA CCAACCATAC CGTCGGGCTA AACGGGTCAG CATTAGAAGA CAATAACCTG
AACTGGAGTC TCCAGCAGAG CGAAACGAAT CACGGCGAAG GGAATGGCGG TTACGCCAGC
CTCGATTATC AGGGGGCCTA CGCACGAATG AATGGTGCCT ACAGCTATGA CAACGACCAG
AAACGCGTTA ACTACGGCAT GGAAGGCGGC ATTGTCGCGC ACGCGCATGG TGTCACGCTC
AGCCAGTCGT TGGGCGAAAC CTCAGCACTG GTAGAAGCCC CCGGGGCGAA TGGTGTTACG
ATAAGCAACC AGACGGGTGT AAAAACCGAC TTCCGCGGTT ACACCGTGGT GCCTTACGTA
ACGCCGTACC GTGAAACCGC CGTCTCACTG GATACCGAAA CGCTGCCTGA TGGTGCTGAC
GTCGACCTGA CCAGCCAGAT GATTACTCCC ACGCGCGGCG CAATTGTACG CGCACATTTT
GATACCCGTA TCGGTAAAAG GGTACTCATG AATTTGTCAC GTACCCCTAC GGAGATAGTG
CCATTTGGAG CGCTGGCAAC GATAGAGGGT CAACCTGCGG ATAAGAGCTT CATCGTGGGT
GACCACGGGC AAGTCTATCT TACCGGTGCG CCCGAACGCG GAACCTTAAA GGTAACGTGG
GGCCGTACGG CGAATGACAC CTGTCACGTA ACATTCAATT TAACAGAATT GAATGCGACT
GATGGTGTGA TGGAAACGCA AGAATCTTGT CGTTAA
|
|---|
| Protein sequence | MNADAYKKIM TLSRIACFIA LQCALPAGNT AFAREYFNPA LLGIDGPGKE LTDLSAFEEG
IGQMPGTYRV DVIVNKSSAG VHDVNFVMQK DTAGNTTLQP CFSVDSLREF GIRTDAFPNL
AGHGDCANLA AIPQASAEFA FERQQLRLSI PQAAVDSHAR GYVAPERLDE GINALLLNYS
FSGANTEARR GDMTDSDSYY LSLRPGLNIG PWRIRNYSTW NRNVNGDSAD ESWDSLYTYA
QRNIIALKSQ LTFGDSTAPS ELFDSVPFRG AQLASDDDML PDSLRGYAPV VRGIARTNAQ
VIIKQNGYTI YQSYVSPGAF EITDMYPTGS SGDLDVTIKE ADGSEQHQTV AFASLPILQR
EGRLKYSVTS GQYRPYESDI DKKMFTQATL IYGLPAGFTV YGGGQFSQHY KSLLTGLGKN
LGELGAVSVD GTQAWSTQKD QDKESGQSWR IRYSKNILET GTNISISGYR YSTSGYYTLP
EVLDTWRDDE SQNNNDRRRN RAELQLNQSI GASLGSLSLN AISEDYWNSD RKMRSLGVGY
SNSWGGVTYN INYSYNRNTT DSDDSDKIYD EDQVFSLSIN IPLDRWLSHS YATYNLNTSK
RGNTNHTVGL NGSALEDNNL NWSLQQSETN HGEGNGGYAS LDYQGAYARM NGAYSYDNDQ
KRVNYGMEGG IVAHAHGVTL SQSLGETSAL VEAPGANGVT ISNQTGVKTD FRGYTVVPYV
TPYRETAVSL DTETLPDGAD VDLTSQMITP TRGAIVRAHF DTRIGKRVLM NLSRTPTEIV
PFGALATIEG QPADKSFIVG DHGQVYLTGA PERGTLKVTW GRTANDTCHV TFNLTELNAT
DGVMETQESC R
|
|---|
| |