Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeSA_A1060 |
Symbol | |
ID | 6519636 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
Kingdom | Bacteria |
Replicon accession | NC_011094 |
Strand | + |
Start bp | 1030127 |
End bp | 1032073 |
Gene Length | 1947 bp |
Protein Length | 648 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642746188 |
Product | macrolide transporter ATP-binding /permease protein |
Protein accession | YP_002113999 |
Protein GI | 194734135 |
COG category | [V] Defense mechanisms |
COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.964805 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.854638 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACAGCAT TGCTTGAACT GCGCAATGTG AGTCGCAGCT ACCCCTCAGG AGAAGAGCAG GTGGCGGTGT TAAAAGATAT CTCCCTGCAA ATCCACGCCG GGGAGATGGT GGCGATCGTC GGCGTTTCCG GTTCTGGAAA ATCAACGCTG ATGAATATCC TCGGGTGCCT GGATAAACCG ACCAGCGGCA CTTATCGGGT GGCGGGGCGG GACGTCTCTA CGCTGGACCC GGACGCGCTG GCGCAGCTGC GGCGTGAGCA TTTTGGCTTT ATCTTTCAGC GATACCATCT GTTGTCGCAT TTAACGGCAG CGCAAAATGT TGAAATCCCC GCCGTCTACG CCGGCATTGA ACGCAAAAAA CGCCAGGCGC GCGCCAGAGA GTTGCTTTTG CGGCTGGGAT TAAGCGATCG CGTCGATTAC CCACCTTCAC AGCTTTCTGG CGGACAGCAG CAGCGTGTCA GCATTGCCCG CGCGCTGATG AACGGCGGAC AGGTGATTCT GGCGGATGAG CCGACCGGCG CGCTGGATAG CCATTCCGGC GAAGAGGTGA TGGCGATTTT GCGCCAACTG CGCGATCGCG GACATACGGT GATCATTGTG ACGCACGATC CGCTGATTGC CGCCCAGGCG GAGCGGATTA TTGAAATTCA CGATGGCAAG ATTGTCCATA ATCCGCCCGC GCAGGAAAAG AAACGCGAAC AGGGCGTTGA CGTTGCCGTA GTTAATACGG CTCCCGGCTG GCGGCAATTT GCCAGCAGCT TTCGCGAAGC GCTGTCGATG GCGTGGTTAG CGATGGCCGC TAACAAAATG CGTACTTTAC TGACCATGCT GGGAATTATT ATCGGTATTG CGTCGGTGGT GTCGATTGTG GTGGTCGGCG ACGCCGCAAA AAAGATGGTA CTGGCGGATA TCCGCGCTAT GGGCACTAAC ACGATTGATA TTCATCCAGG CAAAGATTTT GGCGACGACA ACCCGCAGTA TCGACAGGCG CTGAAATATG ACGATCTGGT GGCTATTCAG AAACAGCCGT GGGTTAACTC TGCGACGCCC AGCGTTTCAA AGAGCCTACG TCTTCGCTAT GGCAATATTG ATATTGCCGT AAATGCTAAT GGCGTCAGTG GCGATTATTT TAACGTTTAC GGCATGTCCT TTAGGGAGGG GAACACCTTC AATGCTGTAC AGCAACAGGA TCGCGCGCAG GTGGTGGTGC TAGATGCCAA CACGCGACGC CAGCTATTTC CAAATAAAGC GAATGTCGTA GGGGAAGTGG TGCTGGTGGG TAATATGCCG GTTATTGTTA TTGGCGTGGC GGAAGAGAAA CCGTCCATGT ACGGCAATAG CAATCTGTTG CAAGTTTGGT TGCCCTATAG CACGATGTCA GATCGCATAA TGGGTCAGTC ATGGCTTAAC TCGATCACCG TTCGTGTGAA AGATGGCGTT GATAGCGATC AGGCTGAACA GCAGCTTACC CGCCTGCTCA CCTTACGCCA CGGTAAAAAA GACTTCTTCA CCTGGAATAT GGACAGCGTC CTGAAAACGG CTGAAAAAAC CACCTATACT CTTCAGTTAT TTCTGACGCT GGTGGCCGTC ATTTCGCTGG TTGTCGGCGG CATCGGCGTT ATGAATATTA TGCTGGTTTC CGTCACCGAG CGAACGCGTG AAATCGGCAT CCGTATGGCG GTAGGCGCGC GCGCCAGCGA TGTGCTACAG CAGTTTCTTA TTGAAGCGGT GCTGGTTTGC CTGGTTGGGG GAGCGCTGGG GATTAGCTTG TCGATGTTCA TCGCATTTAT GCTACAGCTT TTCCTGCCCG GCTGGGAGAT CGGTTTTTCA CTGACTGCGC TGGCGAGCGC GTTTTTATGT TCGACGTTTA CTGGGATACT GTTTGGTTGG CTACCGGCGA GAAACGCGGC GCGACTGGAC CCGGTGGATG CGCTGGCAAG GGAGTAA
|
Protein sequence | MTALLELRNV SRSYPSGEEQ VAVLKDISLQ IHAGEMVAIV GVSGSGKSTL MNILGCLDKP TSGTYRVAGR DVSTLDPDAL AQLRREHFGF IFQRYHLLSH LTAAQNVEIP AVYAGIERKK RQARARELLL RLGLSDRVDY PPSQLSGGQQ QRVSIARALM NGGQVILADE PTGALDSHSG EEVMAILRQL RDRGHTVIIV THDPLIAAQA ERIIEIHDGK IVHNPPAQEK KREQGVDVAV VNTAPGWRQF ASSFREALSM AWLAMAANKM RTLLTMLGII IGIASVVSIV VVGDAAKKMV LADIRAMGTN TIDIHPGKDF GDDNPQYRQA LKYDDLVAIQ KQPWVNSATP SVSKSLRLRY GNIDIAVNAN GVSGDYFNVY GMSFREGNTF NAVQQQDRAQ VVVLDANTRR QLFPNKANVV GEVVLVGNMP VIVIGVAEEK PSMYGNSNLL QVWLPYSTMS DRIMGQSWLN SITVRVKDGV DSDQAEQQLT RLLTLRHGKK DFFTWNMDSV LKTAEKTTYT LQLFLTLVAV ISLVVGGIGV MNIMLVSVTE RTREIGIRMA VGARASDVLQ QFLIEAVLVC LVGGALGISL SMFIAFMLQL FLPGWEIGFS LTALASAFLC STFTGILFGW LPARNAARLD PVDALARE
|
| |