Gene SeSA_A0394 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A0394 
Symbol 
ID6515608 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand+ 
Start bp398373 
End bp399107 
Gene Length735 bp 
Protein Length244 aa 
Translation table11 
GC content37% 
IMG OID642745546 
Productputative transmembrane regulator 
Protein accessionYP_002113370 
Protein GI194734895 
COG category[K] Transcription 
COG ID[COG3710] DNA-binding winged-HTH domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.221341 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones8 
Fosmid unclonability p-value0.00246635 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAATGAAA GCATATTTTT ACTTGATAAG CGTGTTGTAT TTGATAGTAC GAAGATGACC 
TTATCGCATG GTAATGAGAT AATCAGAATA TCAGAAGCTG AGACCCATCT GCTTCTTGCT 
TTTTGGCATG GTCTTTACAA AAAAGAAGAT ATTATTCATT TTGTTTGGGA AAATCGTGGA 
GGCTGCGTCT CAGAATCAAG TTACTATAAA CTCATTAATC AAATGAGAAA TGATTTTAGT 
AGCATCGGTC TACAGCCATC TGATATCGTA ACTCGCCCTC GGGTGGGGGT GTCGCTGTCT 
GTTGCCATTG AACCTATAAA AAAAATCACC TCCCTAAAGG TGAGTGATGA AAACGTTAAG 
GGCACCCCGA CTCGGGAGAA CATATTTTAC AAAATTAAAC GTCACAGCGT ATTTGTGGTA 
TTAACAGGAG CCATTCTTCT GGCATTGCTC TATGGTGTAT TTACTATATA TAAAGCGCCT 
GTTCGTAACA GCTCTGATAG TTTTTTTACA TATCTTGGCG AATATAACGA TTATGCAATC 
TATAAAACAA AAGAGGATAA GGTCACATTA AGTGAAGTAG TTTTTGCTTT TAACTCTCTA 
AAAATTAAAA TTTACCGGCA AAATGGACGC CATCTTTATT ATATCAGGGA GCCTAACATG 
AATATTTTTC TGCAATGCTT AAATCCTGTT GAAATGGCGG TGCCAAAATG TATTACAGTA 
AAAGAACGTT ACTGA
 
Protein sequence
MNESIFLLDK RVVFDSTKMT LSHGNEIIRI SEAETHLLLA FWHGLYKKED IIHFVWENRG 
GCVSESSYYK LINQMRNDFS SIGLQPSDIV TRPRVGVSLS VAIEPIKKIT SLKVSDENVK 
GTPTRENIFY KIKRHSVFVV LTGAILLALL YGVFTIYKAP VRNSSDSFFT YLGEYNDYAI 
YKTKEDKVTL SEVVFAFNSL KIKIYRQNGR HLYYIREPNM NIFLQCLNPV EMAVPKCITV 
KERY