Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeSA_A0318 |
Symbol | icmF |
ID | 6515951 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
Kingdom | Bacteria |
Replicon accession | NC_011094 |
Strand | + |
Start bp | 326189 |
End bp | 330058 |
Gene Length | 3870 bp |
Protein Length | 1289 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642745477 |
Product | type VI secretion protein IcmF |
Protein accession | YP_002113302 |
Protein GI | 194738351 |
COG category | [S] Function unknown |
COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.277614 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAAAAT TTCTTAGTCT GCTTTTTTCC CGGCGCGCGC TGGCAGTTGT GGGCGTTCTG GTTTTGGTGC TGCTGGTCTG GTTTGTCGGG CCGCTGGTAT CATTTGATAC CCTGCGCCCG CTGGCCTCCG TGGGGAGCCG GGTAGTGACC ATTGCCCTGT TGCTGATGTT GCTGGTACTG TGGCTGGTCA ACTGGTCGAT GAGCATTATC GGCATCAGTG TCCTGTGCCT GGCGATTGGC TTCGTCACAC CGCTGCTGGC CCTGGGCGAT GTCCATCCGT TTGCGCCGTT GTGGGTTCGC CTGACCCTGA TTGGTTTCAT CCTGTTGATG TACGCGCTGT ACGGCCTGTA CCGGCTGTGG CGTGCGCTGC GTATGGATGA ACAACTGCTG CGTCGCTTCC TGCATCCGCG CGGGGAAGAG GTACCGGTGG CAGGCGAGAT CAAAGCCGAC CTGCGCACCG TCAACCATAT TGTCACGCAG GCCATCCGGC AACTGCGGCA GTTGCGGGTG GACATGCCCG GCTGGCGTAA AATCTTCGAG GGAAAACGTT TTCTGTATGA GCTGCCGTGG TTCATGGTGG TCGGCAGTCC CGGCGACGGC AAAACCACGG CCCTGCTGAA CACCGGATTG CAGTTCCCGC TGGCGGAGCA AATGGAGCAA ACCTCGCGCA TCCTGACAGT ACCGGGTGGC GGCACGCTAC ACTGCGACTG GTGGTTTACC AACGAAGCGG TGTTGATTGA TACCGCCGGA CGCTACGCTC GCCACGATGA CGGCGGCGAA GCGAGCGCCG CGCAGCGTAA CGCCGGAGAG TGGCAGGGCT TTCTCGGTCT GCTGCGTAAA CATCGCCCCG GCGCGCCGCT TAACGGCGTG ATCCTGACGC TAAACGTGGC GGATTTAACC GCACAGTCAC CGGCGGAACG CCTGGCGGCC TGCGCCGCTC TGCGGGCGCG ACTGGCAGAA CTGCGCGAGA CCCTGGGGAT TCGCTTTCCG GTCTATCTGG TGGTCACCAA AATGGATTTG TTACCGGGTT TCAGCGAGTA TTTTCGCACG CTGACCAGCC ATCTTCGCGC ACAAATCTGG GGCTTCACGT TGCCGTACAG CCGCAGGCGA AAAGCGGGCG ACCCGCAGGC GCTGCATGCC GCCTGCGCAC AGGAGCTGGC GCGCCTGACG CTGCGGCTGG ATCAGGGACT GGATACCCGG TTACAGGAAG AGTACGACCT TAAAAGCCGC CAGCGACTGT ATACCTTCCC GCGTGAGTTC GCCGCCCTCG GCGAGCCGTT ACTGGAGGCT ATTGAACAGA TCTTCCTCGA TTCAAAATTC GATGCCACGC AACTGAATAA CACGCTGCGC GGGGTCTTTT TCACCAGCGC CGCGCAGGCG CAGGCCGACG CCGTGGCCGA CCAGTTGAGT ATCTGGCAGC GCTTTGTCCG GGCGATAAAA ACCGCCCGTG GCGAATCCTC CACCTCTCTC CCACACGCTC TGCCGGACGG CAACCGCAGC TACTTTCTGC ATGACCTGCT GACGCAGTTT ATTTTCCGTG AAGCGCACCT GGTGGAGCCA AACCTCCAGT GGGCCTGGCG TTACCGCCTG CTGCGCCTCG GCGGGCACCT GCTGGTACTG GTGCTGGCAT TCCTGCTGTG GCAGGGGATG CAGACCAGCC AGCAGACCAA CGGCGACTAT CTGAATGAAA TCAGCGCCCG CGCGACCCGG CTGGATGGTG AAGTGAAAGC CTACACCGGT AAACCGGCGA TGGCTCCCGT CCCGGCACTG CTGGACAGCG CAAGGGAACT GTCCGCCTGG CCGGAACTGG ACCCGGACGC GCCGCCGCTG ACCTGGCGCT ACGGCCTGTA CAGCGTACCG CCGGTAACCG ACAGCGTGGC GTCGCTGTAC AACCGTCTGC TGGATCAACT GCTGCTGCCG CCGCTGGTGA AACGGATGGA GTATGTGCTG GCGGACGCCA TTGCCCGTCA GGACAGTAAA GCGGCCTACG ATGCCCTGCG CATCTATCTG CTACTGAATC TGGATAAAGA TCACGAAGAT AAATACAACG CGGCGGAGAT CCAGTCGTGG GTGATTAACG ATCTGGGGAA CAGCGACAGC GTGGCCGGGT TCGGCGGGCG CGCCGCCGTG CTGACGCATA TCGAAGCGCT GTTTGACGGC AGCCGGGTGG TGCATTCACC GTATGAGAAA GATGAGGCGC TGATCCGCCA GGCGCGGGCA TTCCTCGACG GTCACACCAG TACCGAGCGT ATCTACGCGC GGGCGCTGGC GGCAATGGAG AGCGAAGCGC CGCAGGAGTT CACGCTGGTA CGCGCCGTCG GCGCGGATGC GGGAACGGTG TTTGTGCGTA GCAACGGCGC GCCGCTGGAT CGGGGCGTGC CGGGTATTTT TACCCGTGAA GGATACCGGG AGCTGTTCGA CAAACGATTA CCGGAATTTG TGGCGGCGGC GACGGCGAAC GATGGCTGGG TGATGGGCCG GGAGAGTACG CCAAAAAAGC TGACTGACAG CCTGCGCAGC CAGATACCGG GGCAGGAGCA GTCTGTCGCC CGCGAAGTCC GCCGTTTGTA CCTGACGGAA TATGCCCGCC GCTGGCAGGA TTTTCTGGAC AGTATCCATA GTATCAACAG TGCCGGGGAA GAGGGCAGTT CCGGCCTGGC CTATGATTTA CAGGTGCTGC GCACCCTGGC GTCGCCGGAC TCACCGCTGA TGCGGCTGGG AAAAGCGGTG GTGGAGCAGA CCACGCTGGT GCCGCCGCCG GACCCGCAGG CCAGACAGAA ACAACTGGCG CAGCGCGCAT CCGGTAACGC GGGGAAAGTG GTACAGACGG CAAAACTGTT CCAGGATATT CACCCGGAAG AACGGCTGGA AAAAACGCTG GTGGATGACC GTTTCGCCGC GCTGCGCGAG GTCATTGCCG GGCGGACGGA CGGCGGACAG AGCGGCAGTG GGACGATGCA GATCGCTTCG CTGCTGACCA TGCTCAACGA GTATTACACC CAACTGACCA TTGCTGATAG CGCGCTGGCA GCGGGGACGT TGCCAGCGCG CATTACTGCC GCAGACAAGT TGCAACTGGA GGCGGCGAAA CTGCCCGCGC CGCTGAAAAA CATCCTGCTG GATCTGACGA AGCAGGGAAC GCGAAAAATC AACGCCGGGA CCGGCGATGT GCTGAACACT CAGATGGAGG CGATGATGGG CGACGACTGC CGTGACGCCA TCGACGGGCG CTATCCGTTC GCCGACAGTC CGCAGGAGGT CAGCGCCGAG GACTTTAACC GCATCTTCGC CAGCGGTGGC GTACTGGATG CTTTCTGGAG CAAACAACTG GCTCCGCTGG CGGACACCGC CAGCGACCCG TGGCGCTACA AACCGACCGA AGGCAACATG ACGTTGCAGG GGCCGGATTT AACGCCGTTT CAGCAGGCGA AGCAGATCCG CAGCGTGTTT TTTAACAGCG AGGGCGGGAA AAAATTTTCC TGGTCGATGC AGATTAGCGT GGTGGATATG GACCCGGCCA TCACGGAACT GGTGATTGAT ATCGACGGCC AGGTGCTGCG CTACGCCCAT GGTCCGGACC GGCCCCTGAA AGTGACGTGG CCGGGACCGC GCAACGGCTC GATGGCGGAA ATCACCGCCA GCCCGCGTAT TCGCCAGGAC ACCTCAACGC TACTGACCGG CGGGCCGTGG GCGCTGTTTC ATCTGCTGGA CGCCGGAATG GTACAGGAAA CGGCGGTGCG GGGGCGGCAA CTGGTGGAAT ATGATTTTGA CGGTCGTCGG GTGGTGCTGG AAATCACCGC CGGGCGGGAT TTTAACCCGG TCAGCCGGGA GCTGTTGCAG AACTTCAGTT GCCCGGCGAG GGCGCTGTAA
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Protein sequence | MQKFLSLLFS RRALAVVGVL VLVLLVWFVG PLVSFDTLRP LASVGSRVVT IALLLMLLVL WLVNWSMSII GISVLCLAIG FVTPLLALGD VHPFAPLWVR LTLIGFILLM YALYGLYRLW RALRMDEQLL RRFLHPRGEE VPVAGEIKAD LRTVNHIVTQ AIRQLRQLRV DMPGWRKIFE GKRFLYELPW FMVVGSPGDG KTTALLNTGL QFPLAEQMEQ TSRILTVPGG GTLHCDWWFT NEAVLIDTAG RYARHDDGGE ASAAQRNAGE WQGFLGLLRK HRPGAPLNGV ILTLNVADLT AQSPAERLAA CAALRARLAE LRETLGIRFP VYLVVTKMDL LPGFSEYFRT LTSHLRAQIW GFTLPYSRRR KAGDPQALHA ACAQELARLT LRLDQGLDTR LQEEYDLKSR QRLYTFPREF AALGEPLLEA IEQIFLDSKF DATQLNNTLR GVFFTSAAQA QADAVADQLS IWQRFVRAIK TARGESSTSL PHALPDGNRS YFLHDLLTQF IFREAHLVEP NLQWAWRYRL LRLGGHLLVL VLAFLLWQGM QTSQQTNGDY LNEISARATR LDGEVKAYTG KPAMAPVPAL LDSARELSAW PELDPDAPPL TWRYGLYSVP PVTDSVASLY NRLLDQLLLP PLVKRMEYVL ADAIARQDSK AAYDALRIYL LLNLDKDHED KYNAAEIQSW VINDLGNSDS VAGFGGRAAV LTHIEALFDG SRVVHSPYEK DEALIRQARA FLDGHTSTER IYARALAAME SEAPQEFTLV RAVGADAGTV FVRSNGAPLD RGVPGIFTRE GYRELFDKRL PEFVAAATAN DGWVMGREST PKKLTDSLRS QIPGQEQSVA REVRRLYLTE YARRWQDFLD SIHSINSAGE EGSSGLAYDL QVLRTLASPD SPLMRLGKAV VEQTTLVPPP DPQARQKQLA QRASGNAGKV VQTAKLFQDI HPEERLEKTL VDDRFAALRE VIAGRTDGGQ SGSGTMQIAS LLTMLNEYYT QLTIADSALA AGTLPARITA ADKLQLEAAK LPAPLKNILL DLTKQGTRKI NAGTGDVLNT QMEAMMGDDC RDAIDGRYPF ADSPQEVSAE DFNRIFASGG VLDAFWSKQL APLADTASDP WRYKPTEGNM TLQGPDLTPF QQAKQIRSVF FNSEGGKKFS WSMQISVVDM DPAITELVID IDGQVLRYAH GPDRPLKVTW PGPRNGSMAE ITASPRIRQD TSTLLTGGPW ALFHLLDAGM VQETAVRGRQ LVEYDFDGRR VVLEITAGRD FNPVSRELLQ NFSCPARAL
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