Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeSA_A0079 |
Symbol | caiC |
ID | 6516504 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
Kingdom | Bacteria |
Replicon accession | NC_011094 |
Strand | - |
Start bp | 82558 |
End bp | 84111 |
Gene Length | 1554 bp |
Protein Length | 517 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 642745253 |
Product | putative crotonobetaine/carnitine-CoA ligase |
Protein accession | YP_002113085 |
Protein GI | 194734469 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.187597 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.982419 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATATCG TTGGCGGACA AAACTTACGT CAGATGTGGG ACGACCTGGC TGGGGTGTAC GGAGATAAAA CGGCGCTAAT TTTCGAATCC TGTGAGGGAA TCGTTCGGCA GTTTAGCTAT GCCTCGCTCA ATGAAGAGAT TAACCGCACG GCGAACCTTT TTTATGCCTT AGGGATCCGC AAGGGTGATA GGGTCGCGCT ACATCTGGAT AACTGTCCGG AATTCATCTT TTGCTGGTTT GGACTGGCAA AAATCGGCGC CATTATGGTG CCGATTAATG CCCGCTTACT GGGCGAAGAA AGCGCCTGGA TCCTGCAAAA CAGCCAGGTG AGTCTGCTGG TTACCAGCGC CCAGTTTTAT CCTATGTACC GTGAAATACG CCAGGACAAT AGCACTCCGC TTAATCATAT CTGTCTGATT GGCGAGCAGC TTCCGGCTGA CGATGGCGTG AGCCACTTTT CCCAACTGCA AGCACGTCAG TCGGCCACGC TGTGCTATAC GCCCGCGTTA TCCACTGACG ATACGGCGGA AATTCTGTTT ACCTCCGGTA CCACCTCGCG TCCAAAAGGG GTGGTGATTA CCCACTATAA TCTGCGTTTT GCAGGCTACT ACTCTGCCTG GCAAATCGCC CTGCGCGATG ATGACGTGTA CATGACGGTG ATGCCCGCTT TTCATATCGA CTGCCAGTGT ACCGCCGCAA TGCCAGCCTT TTCCGCCGGC AGCACCTTTG TGCTCCTGGA GAAGTACAGC GCCAGGGCCT TCTGGGATCA GGTACGTAAA TATCAGGCGA CGGTGACCGA GTGCATTCCG ATGATGATCC GCACGCTGAT GGTCCAGCCC GCCGCACCAA CGGACAGGCA GCATCATCTG CGCGAAGTGA TGTTCTATCT CAATCTATCC GCGCAGGAAA AAGACGCCTT TACCGAACGC TTTGGCGTCA GGCTGCTGAC CTCTTATGGT ATGACTGAAA CCATTGTCGG AATTATTGGC GACCGTCCCG GAGACAAACG GCGCTGGCCT TCCATTGGTC GCGTGGGTTT TAGCTATGAA GCTGAAATTC GCGACGATCA AAATCGCCCG CTGCCCGCCG GAGAAATTGG CGAAATCTGT ATTAAAGGCA TCCCCGGCAA GACTATCTTC AAAGAGTATT ACATGCAGCC GGAAGCAACC GCCAGGGCGC TGGAACCAGA GGGCTGGTTA CATACCGGTG ATTCGGGTTA CCAGGATGAG GATGGCTATT TCTATTTTGT CGACAGACGC TGCAACATGA TTAAACGTGG CGGAGAAAAT GTCTCCTGCG TCGAGCTGGA AAATATTATT TCTGCACATC CGAAAATTCA GGACATTGTG GTGGTCGGTA TTAAAGATGC GATCCGTGAT GAAGCCATTA AAGCGTTTAT CGTCCTTAAT GAAGGTGAAA CATTAAGCGA AGCCGAGTTT TTCAGCTTTT GCGAAAACAA TATGGCGAAA TTCAAGGTTC CCTCTTTTAT GGAGATCAGA ACTGACCTGC CACGCAACTG TTCAGGAAAA ATAATCAAAA AAAATCTGAA ATAA
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Protein sequence | MDIVGGQNLR QMWDDLAGVY GDKTALIFES CEGIVRQFSY ASLNEEINRT ANLFYALGIR KGDRVALHLD NCPEFIFCWF GLAKIGAIMV PINARLLGEE SAWILQNSQV SLLVTSAQFY PMYREIRQDN STPLNHICLI GEQLPADDGV SHFSQLQARQ SATLCYTPAL STDDTAEILF TSGTTSRPKG VVITHYNLRF AGYYSAWQIA LRDDDVYMTV MPAFHIDCQC TAAMPAFSAG STFVLLEKYS ARAFWDQVRK YQATVTECIP MMIRTLMVQP AAPTDRQHHL REVMFYLNLS AQEKDAFTER FGVRLLTSYG MTETIVGIIG DRPGDKRRWP SIGRVGFSYE AEIRDDQNRP LPAGEIGEIC IKGIPGKTIF KEYYMQPEAT ARALEPEGWL HTGDSGYQDE DGYFYFVDRR CNMIKRGGEN VSCVELENII SAHPKIQDIV VVGIKDAIRD EAIKAFIVLN EGETLSEAEF FSFCENNMAK FKVPSFMEIR TDLPRNCSGK IIKKNLK
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