Gene SeSA_A0045 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A0045 
SymbolnhaR 
ID6518267 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand+ 
Start bp47417 
End bp48316 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content51% 
IMG OID642745220 
Producttranscriptional activator NhaR 
Protein accessionYP_002113052 
Protein GI194736409 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCATGT CTCATATTAA CTACAACCAT CTTTATTACT TCTGGCATGT CTATAAAGAA 
GGTTCTGTCG TGGGTGCCGC AGAGGCGCTT TTTCTGACGC CGCAAACCAT TACTGGTCAA 
ATTAAAGCCC TGGAAGAGCG TTTACAGGGG AAGCTATTTA AACGTAAGGG ACGCGGTCTT 
GAGCCCAGCG AACTGGGCGA GCTGGTTTTT CGCTATGCGG ATAAAATGTT TACGCTAAGC 
CAGGAGATGC TGGATATCGT CAATTACCGC AAAGAATCAA ACCTGTTGTT TGATGTCGGC 
GTCGCCGATG CTTTATCCAA GCGTCTGGTC AGCAGCGTTC TGGATGCGGC GGTGGTGGTG 
GACGAACCCA TACATCTGCG TTGCTTTGAG TCGACGCACG AAATGTTGCT CGAACAGCTC 
AGCCAGCACA AGCTGGATAT GATTATCTCC GACTGCCCGA TAGATTCCAC GCAGCAGGAG 
GGGCTATTCT CAGTCAAAAT CGGCGAATGC AGCGTCAGTT TCTGGTGTAC GAATCCGCTT 
CCTGAAAAAG CGTTCCCTGC CTGCCTGGAA GAGCGACGGT TGCTGGTGCC GGGACGTCGC 
TCAATGCTGG GGCGTAAGTT GTTGAACTGG TTTAATTCGC AGGGGTTGCA GGTTGAGATC 
CTCGGTGAAT TTGATGACGC GGCCTTAATG AAGGCGTTTG GCGCGACGCA TGATGCGATT 
TTTGTGGCGC CGAGCCTTTA TTCGCTGGAT TTTTATGCCG ATGAGTCGGT AATAGAGATT 
GGGCGCGTGG AGAATGTCAT GGAAGAATAT CATGCGATTT TTGCCGAAAG AATGATCCAG 
CATCCGGCGG TGCAGCGTAT TTGCAATGCG GACTACTCGG CATTGTTTAA GCTTCAGTAG
 
Protein sequence
MSMSHINYNH LYYFWHVYKE GSVVGAAEAL FLTPQTITGQ IKALEERLQG KLFKRKGRGL 
EPSELGELVF RYADKMFTLS QEMLDIVNYR KESNLLFDVG VADALSKRLV SSVLDAAVVV 
DEPIHLRCFE STHEMLLEQL SQHKLDMIIS DCPIDSTQQE GLFSVKIGEC SVSFWCTNPL 
PEKAFPACLE ERRLLVPGRR SMLGRKLLNW FNSQGLQVEI LGEFDDAALM KAFGATHDAI 
FVAPSLYSLD FYADESVIEI GRVENVMEEY HAIFAERMIQ HPAVQRICNA DYSALFKLQ