Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeHA_C4523 |
Symbol | metH |
ID | 6488887 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
Kingdom | Bacteria |
Replicon accession | NC_011083 |
Strand | + |
Start bp | 4403723 |
End bp | 4407406 |
Gene Length | 3684 bp |
Protein Length | 1227 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 642744596 |
Product | B12-dependent methionine synthase |
Protein accession | YP_002048173 |
Protein GI | 194449421 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain [COG1410] Methionine synthase I, cobalamin-binding domain |
TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain [TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 62 |
Fosmid unclonability p-value | 0.413038 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGAGCAGCA AAGTTGAACA ACTGCGTGCG CAGTTAAATG AACGTATTCT GGTGCTGGAC GGCGGTATGG GCACTATGAT CCAGAGCTAT CGTCTACATG AAGAAGATTT CCGCGGGGAG CGCTTTGCCG ACTGGCCCTG CGACCTGAAA GGCAACAATG ACCTGCTGGT CCTCAGCAAG CCGGAGGTGA TCGCCGCTAT CCACAACGCC TACTTTGAGG CTGGCGCGGA TATCATCGAA ACCAACACCT TTAACTCGAC AACCATTGCG ATGGCGGATT ACCGGATGGA ATCCCTGTCG GCGGAAATTA ACTATGCGGC GGCCAAACTG GCGCGCGCCT GCGCCGATGA ATGGACGGCG CGAACACCAG AAAAACCACG CTTTGTTGCG GGCGTGCTTG GTCCAACTAA CCGCACGGCC TCCATTTCGC CGGACGTCAA CGACCCGGCG TTTCGTAATA TCACCTTCGA TCAGCTGGTG GCGGCCTACC GTGAATCCAC CAAAGCGCTG GTGGAAGGTG GCGCAGATCT GATTCTGATT GAGACCGTTT TTGACACCCT GAATGCGAAA GCGGCGGTGT TTGCGGTGAA AGAAGAGTTT GAAGCGCTGG GCGTTGACCT GCCGATCATG ATTTCCGGCA CCATCACCGA CGCCTCTGGC CGTACGCTTT CCGGCCAGAC TACCGAAGCC TTTTATAACT CGCTGCGCCA CGCCGAGGCG CTCACTTTTG GCCTTAACTG CGCACTGGGG CCAGATGAAC TGCGCCAGTA CGTCCAGGAA CTGTCGCGGA TTGCCGAATG CTACGTCACC GCGCACCCGA ACGCCGGCCT GCCGAACGCT TTCGGCGAGT ATGACCTCGA CGCCGACACC ATGGCGAAAC AGATTCGCGA ATGGGCGGAA GCGGGCTTCC TGAATATCGT TGGCGGCTGC TGCGGCACCA CGCCGGAGCA TATTGCGGCG ATGAGCCGCG CCGTTGCCGG TTTGCTGCCG CGCCAGCTGC CGGATATCCC GGTCGCCTGC CGCCTTTCCG GCCTGGAGCC GCTGAACATT GGCGACGATA GCCTGTTTGT GAACGTCGGC GAACGTACTA ACGTCACCGG CTCGGCCAAA TTTAAACGGC TGATCAAAGA AGAGAAATAC AGCGAAGCGC TGGATGTCGC CCGTCAGCAG GTAGAAAGCG GCGCGCAGAT TATTGATATC AATATGGATG AGGGGATGCT CGACGCCGAA GCGGCGATGG TGCGTTTCCT CAGCCTGATT GCCGGTGAGC CGGACATTGC CCGTGTACCA ATCATGATCG ACTCCTCCAA ATGGGAGGTT ATCGAAAAAG GGCTGAAGTG CATTCAGGGT AAAGGCATCG TCAACTCTAT TTCGATGAAA GAGGGCGTGG AAGCCTTTAT TCATCATGCG AAGCTTCTGC GTCGCTACGG CGCGGCAGTG GTGGTGATGG CCTTTGATGA GCAGGGGCAG GCCGATACCC GCGCGCGTAA AATCGAAATT TGCCGCCGAG CCTACAAAAT TCTCACCGAA GAGGTGGGTT TCCCGCCGGA AGACATCATC TTCGACCCGA ATATCTTCGC CGTGGCGACC GGTATTGAAG AGCACAACAA CTACGCGCAG GACTTTATCG GCGCTTGCGA AGACATCAAA CGCGAGCTGC CGCACGCGCT GATCTCCGGC GGCGTGTCTA ACGTGTCCTT CTCGTTCCGC GGCAACGACC CGGTACGTGA GGCTATCCAC GCGGTATTCC TCTACTACGC CATCCGCAAC GGTATGGACA TGGGCATCGT CAACGCCGGA CAGCTGGCTA TCTACGACGA CCTGCCCGCC GAGCTGCGCG ATGCGGTTGA AGATGTCATT CTTAACCGTC GCGATGACGG CACTGAGCGT TTGCTGGATT TGGCGGAGAA ATACCGCGGC AGCAAAACCG ACGAAGCTGC CAACGCCCAG CAGGCGGAAT GGCGTAGCTG GGACGTGAAA AAGCGTCTCG AATACTCGCT GGTGAAAGGC ATTACCGAAT TTATCGAACA GGATACCGAA GAAGCCCGTC AGCAGGCCGC CCGCCCGATT GAGGTGATTG AAGGGCCGTT GATGGACGGC ATGAACGTGG TCGGCGACCT GTTCGGCGAA GGGAAAATGT TCCTGCCGCA GGTGGTGAAA TCCGCTCGCG TGATGAAACA AGCGGTGGCC TACCTGGAGC CGTTTATTGA AGCCAGCAAA GAAAAAGGCT CCAGCAACGG CAAGATGGTG ATCGCCACCG TGAAGGGCGA TGTGCACGAT ATTGGTAAAA ATATCGTTGG CGTGGTGCTG CAATGTAACA ACTACGAAAT CGTCGATCTT GGCGTGATGG TGCCAGCGGA GAAAATCCTC AGAACGGCGC GTGAAGTGAA TGCCGATCTG ATCGGTCTTT CCGGGCTGAT TACCCCGTCG CTGGACGAAA TGGTCAACGT GGCGAAAGAG ATGGAGCGTC AGGGCTTTAC TATCCCGCTA CTGATCGGCG GCGCAACCAC TTCGAAAGCG CACACCGCGG TGAAAATCGA GCAGAACTAC AGCGGTCCGA CGGTCTACGT GCAGAATGCT TCGCGTACCG TGGGCGTGGT GGCGGCGCTA CTCTCCGACA ACCAGCGCGA TGACTTTGTC GCCCGTACCC GCAAAGAGTA CGAAACCGTG CGTATTCAGC ACGCCCGCAA AAAACCGCGC ACGCCGCCGG TCACGCTGGA AGCGGCGCGC GATAACGATC TGGCGTTCGA TTGGGAACGT TACACCCCGC CGGTAGCCCA CCGTCTGGGC GTGCAGGAGG TGGAAGCCAG CATCGAAACT TTGCGCAACT ACATCGACTG GACGCCGTTC TTTATGACCT GGTCGCTGGC CGGCAAATAC CCGCGCATTC TGGAAGATGA GGTGGTGGGC GTTGAGGCGC AGCGTCTGTT TAAAGACGCC AATGATATGC TGGATAAACT GAGCGCCGAG AAACTGTTGA ATCCGCGTGG CGTGGTGGGC CTGTTCCCGG CGAACCGTGT GGGTGACGAC ATCGAAATTT ATCGCGACGA AACCCGTACT CATGTTCTGA CGGTCAGCCA CCACCTGCGC CAGCAGACCG AGAAAGTCGG TTTTGCCAAC TACTGTCTGG CGGATTTTGT CGCGCCGAAA CTGAGCGGCA AAGCGGATTA CATCGGTGCT TTCGCGGTGA CCGGCGGTCT GGAGGAGGAT GCGCTGGCGG ACGCCTTCGA AGCGCAACAC GACGACTATA ACAAGATCAT GGTGAAAGCG ATTGCCGACC GTCTGGCGGA AGCGTTTGCC GAGTATCTGC ATGAGCGTGT ACGTAAGGTT TACTGGGGAT ATGCGCCGAA CGAGAGCCTG AGTAACGACG AATTAATCCG CGAAAACTAC CAGGGGATTC GCCCGGCGCC GGGTTATCCT GCCTGCCCGG AACATACCGA AAAAGGCACT ATCTGGCAGC TACTGGATGT CGAAAAACAC ACCGGGATGA AGCTCACCGA ATCTTTCGCC ATGTGGCCAG GCGCGTCGGT CTCCGGCTGG TACTTCAGCC ATCCTGAGAG CAAATACTTT GCGGTAGCGC AGATCCAACG CGATCAGGTG ACAGATTATG CTTTCCGTAA AGGAATGAGC GTTGAGGATG TTGAGCGGTG GCTCGCGCCG AACCTGGGTT ACGATGCGGA CTGA
|
Protein sequence | MSSKVEQLRA QLNERILVLD GGMGTMIQSY RLHEEDFRGE RFADWPCDLK GNNDLLVLSK PEVIAAIHNA YFEAGADIIE TNTFNSTTIA MADYRMESLS AEINYAAAKL ARACADEWTA RTPEKPRFVA GVLGPTNRTA SISPDVNDPA FRNITFDQLV AAYRESTKAL VEGGADLILI ETVFDTLNAK AAVFAVKEEF EALGVDLPIM ISGTITDASG RTLSGQTTEA FYNSLRHAEA LTFGLNCALG PDELRQYVQE LSRIAECYVT AHPNAGLPNA FGEYDLDADT MAKQIREWAE AGFLNIVGGC CGTTPEHIAA MSRAVAGLLP RQLPDIPVAC RLSGLEPLNI GDDSLFVNVG ERTNVTGSAK FKRLIKEEKY SEALDVARQQ VESGAQIIDI NMDEGMLDAE AAMVRFLSLI AGEPDIARVP IMIDSSKWEV IEKGLKCIQG KGIVNSISMK EGVEAFIHHA KLLRRYGAAV VVMAFDEQGQ ADTRARKIEI CRRAYKILTE EVGFPPEDII FDPNIFAVAT GIEEHNNYAQ DFIGACEDIK RELPHALISG GVSNVSFSFR GNDPVREAIH AVFLYYAIRN GMDMGIVNAG QLAIYDDLPA ELRDAVEDVI LNRRDDGTER LLDLAEKYRG SKTDEAANAQ QAEWRSWDVK KRLEYSLVKG ITEFIEQDTE EARQQAARPI EVIEGPLMDG MNVVGDLFGE GKMFLPQVVK SARVMKQAVA YLEPFIEASK EKGSSNGKMV IATVKGDVHD IGKNIVGVVL QCNNYEIVDL GVMVPAEKIL RTAREVNADL IGLSGLITPS LDEMVNVAKE MERQGFTIPL LIGGATTSKA HTAVKIEQNY SGPTVYVQNA SRTVGVVAAL LSDNQRDDFV ARTRKEYETV RIQHARKKPR TPPVTLEAAR DNDLAFDWER YTPPVAHRLG VQEVEASIET LRNYIDWTPF FMTWSLAGKY PRILEDEVVG VEAQRLFKDA NDMLDKLSAE KLLNPRGVVG LFPANRVGDD IEIYRDETRT HVLTVSHHLR QQTEKVGFAN YCLADFVAPK LSGKADYIGA FAVTGGLEED ALADAFEAQH DDYNKIMVKA IADRLAEAFA EYLHERVRKV YWGYAPNESL SNDELIRENY QGIRPAPGYP ACPEHTEKGT IWQLLDVEKH TGMKLTESFA MWPGASVSGW YFSHPESKYF AVAQIQRDQV TDYAFRKGMS VEDVERWLAP NLGYDAD
|
| |