Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeHA_C4146 |
Symbol | ccmF |
ID | 6489455 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
Kingdom | Bacteria |
Replicon accession | NC_011083 |
Strand | - |
Start bp | 4028122 |
End bp | 4030053 |
Gene Length | 1932 bp |
Protein Length | 643 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 642744241 |
Product | cytochrome c-type biogenesis protein CcmF |
Protein accession | YP_002047845 |
Protein GI | 194448206 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1138] Cytochrome c biogenesis factor |
TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 92 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGCCTG AATACGGCCA CGCGCTGCTG TGCCTGGCGC TCGGCGTGGC GCTGCTGCTG TCCGTTTACC CGCTGTGGGG CGTGGCGCGC GGTGACGCGC GGATGATGGC GTCGGCCGGG GTGTTCGCCT GGCTGCTGTT TATCTGCGTG GCGGGCGCGT TTTTCGTGCT GGTGCACGCC TTTGTGGTTA ACGACTTCAC CGTGGCCTAT GTCGCCGGCA ACTCGAACAC GCAGCTGCCG GTGTGGTACC GGGTGGCCGC CACCTGGGGG GCGCACGAGG GCTCGCTGCT GCTGTGGGTG CTGCTGATGA GCGGCTGGAC CCTGGCGGTG GCGGTGTTCA GCCGGCAGGT GCCGGCGGAT ATCGTCGCCC GGGTGCTGGC GGTGATGGGG ATGGTCTGCG CCGGTTTTCT GGCGTTCATC CTGTTCACCT CCGGCCCGTT CGCCCGCACG CTGCCGGCCT TTCCGGTGGA GGGGCGCGAC CTGAACCCGC TGCTGCAGGA CCCGGGGCTG ATTTTCCACC CGCCGCTGCT GTACATGGGC TATGTCGGCT TCTCGGTGGC CTTCGCCTTC GCCATCGCCG CGCTGCTGAG CGGGCGTCTG GACAGCGCGT TCACCCGTTT TGCCCGCCCG TGGACGCTGG CGGCGTGGGT GTTCCTGACG CTGGGCATCG TGCTCGGCTC GGCGTGGGCC TACTACGAGC TGGGCTGGGG CGGCTGGTGG TTCTGGGACC CGGTGGAGAA CGCCTCCTTT ATGCCGTGGC TGGCGGGCAC CGCCCTGCTG CACTCGCTGG CGGTCACCGA ACAGCGCGCC GGCTTTAAGG CGTGGACGCT GCTGCTGTCC ATCTGCGCCT TCTCGCTGTG CCTGCTGGGC ACCTTCCTGG TGCGCTCCGG GGTGCTGGTG TCGGTGCACG CCTTCGCCTC CGACCCGGCG CGCGGGATGT TTATCCTCGC CTTTATGGTG CTGGTCACCG GCGGCTCGCT GCTGCTGTTC GCCGTGCGCG GGCACAGGGT GCGTTCGCGG GTGAACAACG CGCTGTGGTC GCGCGAGTCG CTGCTGCTCG GCAACAACGT CCTGCTGATG GCCGCCATGC TGGTGGTGCT GCTGGGCACC CTGCTGCCGC TGGTGCACAA ACAGCTGGGG CTGGGCAGCA TTTCGGTGGG GGAGCCGTTC TTTAACACCA TGTTCACCTG GCTGATGGTC CCCTTTGCCC TGCTGCTGGG GGTGGGGCCG CTGGTGCGCT GGGGCCGGGA CCGGCCGCGT AACATCAGGA CGCTGCTGCT CACCGCCCTG GTCTCCACCC TGGTGCTGTC GGTACTTTTG CCATGGCTGC TGGAAGATAA AATCATCGCC ATGACGGCGG TGGGGATGGC GATGGCCTGC TGGATTGCGG TGCTGGCGGT GGCCGAAGCC GTACAGCGCG TGTCCCGCGG CACGAAAACC TCTCTCAGCT ACTGGGGAAT GGTGGCGGCG CACCTCGGGC TGGCGGTGAC GATTACCGGC ATCGCCTTCA GCCAGAATTA CAGCGTGGAG CGTGACGTGC GGATGCGGGC GGGCGACAGC GTGACCATTC ACGACTACCG CTTCACCTTC CCGGAGGTGC GGGACATCAC CGGGCCCAAC TACCGCGGCG GGGTGGCCCT CATCGGGGTG ACGCGCCACG GCGAGCCGGA GGCGGTGCTG CACGCGGAGA AACGGCTCTA CAACACCAGC CGGATGGTGA TGACCGAGGC GGCGATTGAC GGCGGGCTGA CCCGCGACCT GTACGCCGCG CTCGGGGAGG AGCTGGACAA CGGCGCGTGG GCCGTGCGCC TGTACTACAA ACCGTTTGTC CGCTGGATAT GGGCCGGGGG ACTGCTGATG GCGCTGGGCG GGCTGCTGTG CCTGGCGGAC CCGCGCTACC GCCGCCGTAA ACCATTGCCG GAGGCCGGAT GA
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Protein sequence | MMPEYGHALL CLALGVALLL SVYPLWGVAR GDARMMASAG VFAWLLFICV AGAFFVLVHA FVVNDFTVAY VAGNSNTQLP VWYRVAATWG AHEGSLLLWV LLMSGWTLAV AVFSRQVPAD IVARVLAVMG MVCAGFLAFI LFTSGPFART LPAFPVEGRD LNPLLQDPGL IFHPPLLYMG YVGFSVAFAF AIAALLSGRL DSAFTRFARP WTLAAWVFLT LGIVLGSAWA YYELGWGGWW FWDPVENASF MPWLAGTALL HSLAVTEQRA GFKAWTLLLS ICAFSLCLLG TFLVRSGVLV SVHAFASDPA RGMFILAFMV LVTGGSLLLF AVRGHRVRSR VNNALWSRES LLLGNNVLLM AAMLVVLLGT LLPLVHKQLG LGSISVGEPF FNTMFTWLMV PFALLLGVGP LVRWGRDRPR NIRTLLLTAL VSTLVLSVLL PWLLEDKIIA MTAVGMAMAC WIAVLAVAEA VQRVSRGTKT SLSYWGMVAA HLGLAVTITG IAFSQNYSVE RDVRMRAGDS VTIHDYRFTF PEVRDITGPN YRGGVALIGV TRHGEPEAVL HAEKRLYNTS RMVMTEAAID GGLTRDLYAA LGEELDNGAW AVRLYYKPFV RWIWAGGLLM ALGGLLCLAD PRYRRRKPLP EAG
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