Gene SeHA_C2820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeHA_C2820 
Symbol 
ID6487692 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Heidelberg str. SL476 
KingdomBacteria 
Replicon accessionNC_011083 
Strand+ 
Start bp2753319 
End bp2754863 
Gene Length1545 bp 
Protein Length514 aa 
Translation table11 
GC content48% 
IMG OID642742992 
ProductDNA-binding transcriptional activator CadC 
Protein accessionYP_002046619 
Protein GI194449042 
COG category[K] Transcription 
COG ID[COG3710] DNA-binding winged-HTH domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.0342818 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones78 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCAAC CTGTTGTACG CATTGGAGAG TGGCTGGTTA CACCTTCTGT TAATCAGATC 
AGTCGTCAGG GACGCCAGAT TACTCTTGAA CCACGGCTGA TCGATCTTCT GATGTATTTT 
GCGCATCATC CGGATGAAGT GTTAAGCCGG GATAACATTA TTGATCATGT CTGGATGCGC 
ACCATCGTGA CCAACCATGT TGTCACCCAA AGCATTTCTG AACTACGCAA ATCATTAAGA 
GATGGCGGAG ACAGCAATGC TGAATACATC GTTACCGTAC CTAAACGCGG CTATAAGCTG 
ACGGCGCCGG TTATCTGGTG CGAAGAAAAT AGCGATGAGA TCGATAATTC ATCAACGTCG 
CCGCCGCCGC CGATCGCAGC GACGAATGCA GAACCGACGG AGGGGGTTAC TGCCGCTACG 
CCTGTGCCGC CCGCCTCTTT GCAAACGCCG ACTAAAAAGG CGAAAAAGCC GCGTATCGCC 
GCTTTCTGGA CGTGGGTAAT GTTCCTACTC TCGCTGGCGA CGCTGGTGGT GTTTATCGTG 
ATGTCGGTGG TAGATCATAA TGCCGCGGTA ACAAAAACGC GGTTATTACT TAACCCACGA 
GATATAGATG TTCGTTTTGA AGGCGGCAAT TCCTGTAATA ACTGGGTCTC GCAGGAGTCC 
TACGCCATCG GTCTGGGCGG CTTAATCACC GACCTGCTGA ACACCTACTC GACTTTTATG 
GTGCACGATA AAACCAATTA CCGGGTCAAT GAGCCAAGCA GCTCCGGTAA GACGTTAACC 
ATTCAGTTTG TCAATCAGCG CCACTATCGG GCGCAGCAGT GCTTTATGTC TGTAGTGCTC 
ATTGATAACG CCGATGGTTC AACCATGCTG GATAAGCGTT ATTTCGTCAC CAATACTAAC 
CAGTTGTCCA TCCAGGATGA TCTGTTTAAT AGCCTGTCTT TCGTTTTAAC ACAGCCCTGG 
CCTAATCGAA TGCGAGAACA ACTGGCCCTG TTCAGAACGC CGCAAAATAC CGCGCTGATG 
CGTTTTTATG AGGCGCGCCA GCTTATTCTG AGCGGCGATG CGCAGGCGCT AGGTAAAGCC 
AGCGATATTC TGAATGGCAT TATTAAGGAA ACGCCTGATT TCAACTATGC CTATGAATAT 
AAAGTGCTGG TAGATGTATT ACGGCAATCA CAACAGCCGT TTGATAAAGA ACAAGTGGCT 
GCGCTGAACG AAGAGTTTAA AAAAATAGAT CAAATTCCGG GCGTTGAGAA AACGTCTGTT 
TATTATAAAA TCAAGACCGT TGATCTTTTG GGCAAAGGTG ATATCGATGC AGCGTATGAG 
GAAATCAATA AAAGCATCGA GCTTGAAATG TCGTGGTTTA ACTATGTCCT GTTGGGGAAA 
GTTTACGAAA TGAAAGGTGA GAATCGTCTG GCCGCTGATG CCTATCTGAC CGCCTTTAAT 
TTACGTCCAG GTGAAAACAC GCTGTACTGG ATCGAGAACG GCGTATTTCA GACATCCGTT 
CAGAAAATTG TCCCTTACCT GAATAGTTTT CTGGCAGAAG ATTAA
 
Protein sequence
MQQPVVRIGE WLVTPSVNQI SRQGRQITLE PRLIDLLMYF AHHPDEVLSR DNIIDHVWMR 
TIVTNHVVTQ SISELRKSLR DGGDSNAEYI VTVPKRGYKL TAPVIWCEEN SDEIDNSSTS 
PPPPIAATNA EPTEGVTAAT PVPPASLQTP TKKAKKPRIA AFWTWVMFLL SLATLVVFIV 
MSVVDHNAAV TKTRLLLNPR DIDVRFEGGN SCNNWVSQES YAIGLGGLIT DLLNTYSTFM 
VHDKTNYRVN EPSSSGKTLT IQFVNQRHYR AQQCFMSVVL IDNADGSTML DKRYFVTNTN 
QLSIQDDLFN SLSFVLTQPW PNRMREQLAL FRTPQNTALM RFYEARQLIL SGDAQALGKA 
SDILNGIIKE TPDFNYAYEY KVLVDVLRQS QQPFDKEQVA ALNEEFKKID QIPGVEKTSV 
YYKIKTVDLL GKGDIDAAYE EINKSIELEM SWFNYVLLGK VYEMKGENRL AADAYLTAFN 
LRPGENTLYW IENGVFQTSV QKIVPYLNSF LAED