Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeHA_C1904 |
Symbol | topA |
ID | 6490314 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
Kingdom | Bacteria |
Replicon accession | NC_011083 |
Strand | - |
Start bp | 1857603 |
End bp | 1860200 |
Gene Length | 2598 bp |
Protein Length | 865 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642742116 |
Product | DNA topoisomerase I |
Protein accession | YP_002045761 |
Protein GI | 194448946 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA |
TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.42777 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 2.78185e-16 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGGTAAAG CTCTTGTCAT CGTTGAGTCC CCGGCAAAAG CCAAAACGAT CAACAAGTAT CTGGGTAATG ACTACGTGGT GAAATCCAGC GTGGGTCATA TCCGTGATTT GCCGACCAGT GGCTCAGCAG CTAAAAAGAG CGCCGACTCT ACCTCCACCA AAACGGCTAA AAAGCCCAAA AAGGATGAAC GTGGCGCTCT CGTCAACCGT ATGGGGGTTG ACCCGTGGCA CAACTGGGAT GCGCACTATG AAGTGCTGCC CGGTAAAGAG AAGGTCGTCT CTGAACTGAA ACAGTTGGCG GAAAAAGCCG ACCACATCTA TCTCGCAACC GACCTTGACC GCGAAGGGGA AGCCATTGCA TGGCACCTGC GGGAAGTGAT CGGCGGCGAT GACGCGCGCT ACAGCCGCGT AGTCTTTAAC GAAATAACCA AAAATGCCAT TCGCCAGGCG TTTGAACAGC CGGGCGAGCT GAACATTAAC AGGGTCAACG CCCAGCAAGC GCGCCGCTTT ATGGACCGCG TGGTAGGCTA TATGGTCTCG CCGCTGCTGT GGAAAAAGAT CGCCCGTGGT TTGTCGGCAG GTCGCGTTCA GTCTGTCGCG GTCCGTCTGG TCGTTGAACG CGAGCGCGAG ATTAAAGCGT TTGTTCCGGA AGAGTTCTGG GAAATTGACG CCAATACGAC GACGCCGTCT GGCGAGGCGC TACCGCTACA GGTCACGCAT CAGAACGACA AGCCATTCCG GCCGGTAAAT CGCGAGCAGA CGCTTGCCGC CGTCAGCTTG CTGGAAAAAG CGCGCTATAG CGTACTGGAG CGTGAAGACA AACCGACCAG CAGCAAACCT GGCGCGCCGT TTATCACCTC CACGCTACAA CAGGCGGCCA GCACCCGGCT GGGCTTTGGC GTGAAGAAAA CCATGATGAT GGCGCAGCGT CTGTATGAGG CGGGCTACAT CACCTATATG CGTACCGACT CCACCAACCT GAGTCAGGAT GCGGTCAACA TGGTGCGCGG CTATATTGGC GATAATTTCG GCAAGAAATA CCTGCCGGAT AACCCGAACC AGTACGCCAG CAAAGAAAAC TCTCAGGAAG CGCACGAAGC GATCCGTCCT TCCGACGTTG CTGTCATGGC GGAGTCGCTG AAAGACATGG AGGCTGACGC GCAGAAGTTG TATCAGCTAA TTTGGCGTCA GTTTGTCGCC TGTCAGATGA CGCCAGCACA ATATGACTCC ACTACGCTTA CCGTTGGCGC AGGCGAATTC CGTCTGAAAG CGCGTGGGCG TATTTTGCGC TTTGACGGCT GGACAAAAGT GATGCCGGCG CTGCGTAAAG GCGATGAAGA TCGCACATTG CCTGCCGTGA ATAAGGGCGA TGCGCTGACG CTACTTGAAT TGACGCCTGC TCAGCACTTT ACTAAACCGC CAGCCCGTTT CAGCGAGGCT TCTCTGGTTA AAGAACTTGA GAAGCGCGGT ATTGGTCGTC CGTCTACCTA TGCGTCGATT ATCTCGACCA TTCAGGATCG CGGCTATGTT CGCGTTGAAA ACCGTCGCTT CTATGCGGAA AAAATGGGTG AAATCGTCAC CGACCGGCTG GAAGAAAACT TCCGCGAATT GATGAACTAC GATTTTACCG CGCAGATGGA AGATAGTCTG GATCAGGTTG CGAATCACCA GGCCGAGTGG AAAGCGGTAC TGGATAACTT CTTCAGCGAT TTTACTCAGC AGCTCGATAA AGCCGAGAAA GATCCGGAAG AAGGGGGGAT GCGTCCTAAC CAGATGGTGC TGACCAGCAT CGACTGTCCA ACCTGTGGCC GTAAAATGGG AATTCGTACT GCCAGTACGG GGGTTTTCCT TGGATGTTCA GGTTATGCGC TTTCGCCGAA AGAGCGTTGT AAAACGACCA TTAACCTGGT GCCGGAAAAT GAAGTTCTGA ACGTGCTGGA AGGCGACGAC GCCGAAACCA ACGCCCTGCG CGCCAAGCGT CGCTGTCAGA AGTGCGGTAC GGCGATGGAC AGCTATCTGA TCGATCCGAA GCGTAAATTG CATGTGTGTG GTAATAACCC GACCTGTGAC GGCTACGAGA TTGAAGAAGG CGAGTTCCGC ATCAAAGGGT ATGACGGCCC GATCGTTGAG TGTGAGAAAT GTGGTTCCGA AATGCACCTG AAAATGGGGC GTTTTGGTAA GTACATGGCC TGTACTAACG ACGAATGTAA AAATACCCGT AAGATCTTGC GTAACGGCGA AGTTGCGCCG CCGAAGGAAG ATCCTGTTCC ATTACCGGAA CTGCCGTGTG AAAAATCGGA CGCGTACTTT GTGCTACGCG ACGGCGCCGC AGGGATATTC CTGGCGGCCA ATACGTTCCC GAAATCACGC GAAACGCGCG CGCCATTAGT CGAGGAGCTT TACCGGTTCC GCGATCGCCT GCCGGAAAAA CTGCGTTATC TGGCGGATGC GCCGCAGCAG GACCCGGAAG GTAATAAAAC CGTTGTTCGC TTTAGCCGCA AAACAAAACA GCAGTACGTT GCGGCGGAAA AAGACGGGAA GGCGACGGGA TGGTCAGCGT TCTTCGTCGA CGGCAAGTGG GTTGAAGGCA AGAAATAA
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Protein sequence | MGKALVIVES PAKAKTINKY LGNDYVVKSS VGHIRDLPTS GSAAKKSADS TSTKTAKKPK KDERGALVNR MGVDPWHNWD AHYEVLPGKE KVVSELKQLA EKADHIYLAT DLDREGEAIA WHLREVIGGD DARYSRVVFN EITKNAIRQA FEQPGELNIN RVNAQQARRF MDRVVGYMVS PLLWKKIARG LSAGRVQSVA VRLVVERERE IKAFVPEEFW EIDANTTTPS GEALPLQVTH QNDKPFRPVN REQTLAAVSL LEKARYSVLE REDKPTSSKP GAPFITSTLQ QAASTRLGFG VKKTMMMAQR LYEAGYITYM RTDSTNLSQD AVNMVRGYIG DNFGKKYLPD NPNQYASKEN SQEAHEAIRP SDVAVMAESL KDMEADAQKL YQLIWRQFVA CQMTPAQYDS TTLTVGAGEF RLKARGRILR FDGWTKVMPA LRKGDEDRTL PAVNKGDALT LLELTPAQHF TKPPARFSEA SLVKELEKRG IGRPSTYASI ISTIQDRGYV RVENRRFYAE KMGEIVTDRL EENFRELMNY DFTAQMEDSL DQVANHQAEW KAVLDNFFSD FTQQLDKAEK DPEEGGMRPN QMVLTSIDCP TCGRKMGIRT ASTGVFLGCS GYALSPKERC KTTINLVPEN EVLNVLEGDD AETNALRAKR RCQKCGTAMD SYLIDPKRKL HVCGNNPTCD GYEIEEGEFR IKGYDGPIVE CEKCGSEMHL KMGRFGKYMA CTNDECKNTR KILRNGEVAP PKEDPVPLPE LPCEKSDAYF VLRDGAAGIF LAANTFPKSR ETRAPLVEEL YRFRDRLPEK LRYLADAPQQ DPEGNKTVVR FSRKTKQQYV AAEKDGKATG WSAFFVDGKW VEGKK
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