Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeHA_C1253 |
Symbol | csgD |
ID | 6488638 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
Kingdom | Bacteria |
Replicon accession | NC_011083 |
Strand | - |
Start bp | 1234077 |
End bp | 1234727 |
Gene Length | 651 bp |
Protein Length | 216 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 642741490 |
Product | DNA-binding transcriptional regulator CsgD |
Protein accession | YP_002045140 |
Protein GI | 194450147 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 71 |
Fosmid unclonability p-value | 0.705931 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTAATG AAGTCCATAG TAGTCATGGT CACACACTAT TGTTGATCAC AAAGCCATCT CTGCAAGCTA CGGCATTATT GCAACATTTA AAGCAATCGC TGGCCATAAC CGGAAAACTG CATAATATTC AACGTTCTCT GGAAGATATC TCAGCCAGTT GCATTGTTTT AATGGATATG ATGGAAGCGG ATAAGAAGCT TATCCACTAT TGGCAGGATA ATTTAAGCCG CAAAAACAAT AATATAAAAA CATTATTGTT AAATACCCCT GACGATTATC CCTACCGTGA AATTGAAAAC TGGCCTCATA TTAACGGCGT GTTTTACGCC ACTGAAGACC AGGAACACGT GGTCAGCGGA TTACAGGGTA TTCTGCGTGG CGAATGCTAT TTTTCACAAA AATTAGCCAG TTACCTGATT ACGCACTCAG GAAATTACCG CTACAACAGC ACCGAGTCCG CATTACTCAC TCATCGCGAA AAAGAGATCC TCAATAAGTT ACGTATTGGT GCCTCTAATA ATGAAATCGC GAGGTCGCTA TTTATCAGCG AGAATACGGT TAAGACACAT CTTTATAATC TTTTCAAAAA GATAGCTGTC AAAAATCGCA CCCAGGCAGT TTCATGGGCA AACGATAATC TCAGGCGGTA A
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Protein sequence | MFNEVHSSHG HTLLLITKPS LQATALLQHL KQSLAITGKL HNIQRSLEDI SASCIVLMDM MEADKKLIHY WQDNLSRKNN NIKTLLLNTP DDYPYREIEN WPHINGVFYA TEDQEHVVSG LQGILRGECY FSQKLASYLI THSGNYRYNS TESALLTHRE KEILNKLRIG ASNNEIARSL FISENTVKTH LYNLFKKIAV KNRTQAVSWA NDNLRR
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