Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeHA_C0507 |
Symbol | secD |
ID | 6488289 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
Kingdom | Bacteria |
Replicon accession | NC_011083 |
Strand | + |
Start bp | 509466 |
End bp | 511313 |
Gene Length | 1848 bp |
Protein Length | 615 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642740774 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_002044441 |
Protein GI | 194451842 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.714923 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 81 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTTAAACC GTTATCCTTT GTGGAAGTAC ATCATGCTGG TCGTCGTGAT TATCGTCGGC CTGCTTTACG CACTTCCCAA CCTGTATGGT GAGGATCCGG CTGTTCAAAT CACTGGCGTG CGCGGCGTCG CCGCCAGTGA GCAAACGCTG ATCCAGGTCC AGAAAACGTT ACAAGAAGAA AAAATTCCCG CTAAGTCTGT GGCACTGGAA GAGGGCGCTA TTCTTGCGCG CTTCGACACC ACCGATACCC AGCTACGCGC CCGTGAAGCG CTGATGAGCG TGCTGGGGGA TAAATATGTC GTGGCGCTTA ACCTTGCGCC GGCTACGCCG CGCTGGTTGG CGGCTATTCA CGCCGATCCG ATGAAGCTCG GTCTTGATCT GCGCGGCGGC GTTCACTTCC TGATGGAAGT GGATATGGAT ACCGCGTTAG GTAAACTCCA GGAACAAAAT ATCGATAGCC TGCGCAGCGA TCTGCGTGAA AAAGGCATTC CTTATACCAC CGTTCGTAAA GAAAATAATT ATGGGCTGAG CATCACGTTC CGTGACAGCA AAGCGCGTGA TGAGGCGATC GCCTATCTGA CGCCGCGTCA TCGTGACCTG GTGATTTCCA GCCAGAGCGG TAATCAACTT CGCGCGGTAA TGACCGATGC GCGCCTGAGC GAAGCGCGCG AATACGCCGT TCAGCAGAAC ATTAATATTC TGCGTAACCG TGTTAACCAA CTGGGCGTCG CGGAGCCTGT CGTACAACGC CAGGGCGCAG ACCGTATTGT GGTTGAGCTG CCGGGTATCC AGGATACCGC TCGCGCGAAA GAAATTCTCG GCGCGACCGC GACGCTGGAA TTCCGTCTGG TGAATACCAA CGTTGACCAG GCCGCCGCTG CTGCCGGGCG CGTACCGGGC GATTCCGAAG TGAAACAGAC CCGCGAAGGC CAGCCGGTGG TATTGTACAA ACGCGTGATC CTCACGGGCG ACCATATCAC CGACTCGACG TCCAGCCAGG ATGAATATAA CCAACCGCAG GTTAACATCT CGCTGGATAG CGCAGGCGGC AATATCATGT CTAACTTCAC TAAGGACAAT ATCGGCAAAC CGATGGCGAC CCTGTTTGTG GAGTATAAAG ACAGCGGTAA GAAAGACGCT AATGGTCGCG CCGTACTGGT GAAACAGGAA GAGGTGATTA ACATTGCCAA CATCCAGTCT CGGCTGGGTA ACAGCTTCCG TATTACTGGT ATCAGCAACC CGAACGAAGC GCGTCAGCTC TCGTTGTTGT TGCGTGCGGG CGCCCTGATT GCGCCGATTC AGATCGTTGA AGAGCGCACC ATTGGCCCGA CTCTGGGTAT GCAGAACATC AAGCAGGGCC TGGAAGCCTG TCTGGCCGGT CTGGTGGTCT CCATCCTGTT CATGATCTTC TTCTATAAGA AGTTTGGTCT GATTGCGACC AGCGCGTTAG TGGCTAACCT GGTGTTGATT GTCGGTATCA TGTCGCTGTT GCCGGGGGCA ACGCTCAGTA TGCCGGGGAT TGCGGGTATC GTGTTAACCC TTGCGGTGGC GGTCGACGCC AACGTTCTGA TTAACGAACG TATCAAAGAA GAGTTGAGTA ATGGCCGCAC GGTACAGCAG GCGATAAACG AAGGCTATGC CGGCGCGTTC AGTTCCATCT TCGATGCGAA CATCACGACG CTGATTAAAG TCATCATTCT GTATGCTGTC GGTACCGGGG CAATTAAAGG GTTCGCGATT ACGACCGGTA TCGGTGTGGC GACGTCGATG TTTACCGCGA TTATCGGTAC GCGTGCTATC GTAAACCTGC TATATGGCGG CAAGCGCGTC ACTAAGCTGT CAATCTGA
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Protein sequence | MLNRYPLWKY IMLVVVIIVG LLYALPNLYG EDPAVQITGV RGVAASEQTL IQVQKTLQEE KIPAKSVALE EGAILARFDT TDTQLRAREA LMSVLGDKYV VALNLAPATP RWLAAIHADP MKLGLDLRGG VHFLMEVDMD TALGKLQEQN IDSLRSDLRE KGIPYTTVRK ENNYGLSITF RDSKARDEAI AYLTPRHRDL VISSQSGNQL RAVMTDARLS EAREYAVQQN INILRNRVNQ LGVAEPVVQR QGADRIVVEL PGIQDTARAK EILGATATLE FRLVNTNVDQ AAAAAGRVPG DSEVKQTREG QPVVLYKRVI LTGDHITDST SSQDEYNQPQ VNISLDSAGG NIMSNFTKDN IGKPMATLFV EYKDSGKKDA NGRAVLVKQE EVINIANIQS RLGNSFRITG ISNPNEARQL SLLLRAGALI APIQIVEERT IGPTLGMQNI KQGLEACLAG LVVSILFMIF FYKKFGLIAT SALVANLVLI VGIMSLLPGA TLSMPGIAGI VLTLAVAVDA NVLINERIKE ELSNGRTVQQ AINEGYAGAF SSIFDANITT LIKVIILYAV GTGAIKGFAI TTGIGVATSM FTAIIGTRAI VNLLYGGKRV TKLSI
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