| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeHA_C0443 |
|---|
| Symbol | oprA |
|---|
| ID | 6490748 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011083 |
|---|
| Strand | - |
|---|
| Start bp | 439546 |
|---|
| End bp | 441003 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642740712 |
|---|
| Product | outer membrane efflux protein OprA |
|---|
| Protein accession | YP_002044379 |
|---|
| Protein GI | 194448804 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.340499 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.0000000156404 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCA CTTTTAGAGG CTATCGGCAG ACCGCCACGC TGGCGACGCT TGCTTTCGTC
ACCACGCTTG CTGGCTGTAC GATGGCGCCG AAGCACGAAC GCCCCGCATC GCCGACTGCG
ATGGTCTATC CCTACGCAAC GTCAACCGTT TCTGGCGCGC CGGATGCCGC TGACATTGGC
TGGCGTGATT TCTTCCACGA TCCGCTTCTA CAGGAACTGA TTGCGATCGC GTTACGCAAT
AATCGGGATT TACGCAAGGC AGGGCTCAAT GTTGAAGCCG CCCGGGCGTT ATACCGTATT
CAGCGCGCGG AGATGCTGCC GACGCTCGGC ATCGCCACCG CCATGGACGC CGGTCGCACT
CCCGCCGATC TCAGCGTCAC GGACGAGCCT GAGATTAACC GACGCTACGA GATGGCTGGG
GCGACCACGG CCTGGGAACT GGATCTCTGG GGGCGAGTGC GAAGCCTTAG CGACCAGGCA
TTAGCCGCCT ATATGGCGCT TGATGAGACG TACATTGCGG CGCGAATGAG CCTGGTTTCC
GAAGTCGCCA GCGCCTGGCT GACGCTACGG GCTGACCGGG AGCTGCTGCG CTTAACCGAA
GATACGCTGG CCGCGCAAAA AAGTTCATAC ACATTGACAA CCCAGCTTGC CCGGACAGGC
AACGCCACAC AGCTCGATCT GCGTATGGCG GAGATCGCGC TGCGTTCTGC GGAAATCAAT
CGCGCGGCGT ATACGCGACA GTTGGCGCGG GATCGTAACG CGCTTGAATT GCTGTTGGGC
CAGCCGCTCA CGCCTGAACT GTCGCGTCGA CTAAACGAGG CGGTCACGCT TACGGAAGGC
GCGATCCCGA CCACTCTGCC AGGCGGATTA CCGTCAGATC TGCTGGTACG CCGCCCGGAT
ATTCGCGCCG CCGAGTACAG GCTGCGTGGC GCAAACGCCC GGATAGGCGC AGCGCGCGCC
GCCTTCTTCC CGACCATCAG CCTGACAGGC GCGGCGGGAA CGGCCAGCGC GTCTCTTAGC
GGACTCTTTG AACCGGGATC GGGAAGCTGG CGTTTTCTAC CGCAAATCAC CTTGCCTCTC
TTTCACGGCG GCGCATTACG CGCTGACCTG GATAGGGCGC ATGTCCAAAA ACAGATTGAA
ATCGCCAGGT ATGAAAACGT TATTCAGCAA GCCTTTCGCG ACGTGGCGGA TGGTCTGGCG
GGACAGCGTA CGCTGAATGA CCAGGTGCAA TCAGAACAAC GCGCGGTTGA AGCCAGTCAA
ATCGCCTATG AGCTGGCCGG ACTCCGTTTT CAGGAAGGCG TCGATGACTA CCTTACGCTG
CTTGATACCC ATCGTATGCT TTATGGCGCA CAACAGCGCC TGGTACGCAC ACGTCTCATG
CAACAGTTAA ATATCATTAA CCTGTATAAA GCATTAGGCG GCGGTTGGCG GGAATACAGT
GAGAAAAAGC AAGGTTAG
|
|---|
| Protein sequence | MKITFRGYRQ TATLATLAFV TTLAGCTMAP KHERPASPTA MVYPYATSTV SGAPDAADIG
WRDFFHDPLL QELIAIALRN NRDLRKAGLN VEAARALYRI QRAEMLPTLG IATAMDAGRT
PADLSVTDEP EINRRYEMAG ATTAWELDLW GRVRSLSDQA LAAYMALDET YIAARMSLVS
EVASAWLTLR ADRELLRLTE DTLAAQKSSY TLTTQLARTG NATQLDLRMA EIALRSAEIN
RAAYTRQLAR DRNALELLLG QPLTPELSRR LNEAVTLTEG AIPTTLPGGL PSDLLVRRPD
IRAAEYRLRG ANARIGAARA AFFPTISLTG AAGTASASLS GLFEPGSGSW RFLPQITLPL
FHGGALRADL DRAHVQKQIE IARYENVIQQ AFRDVADGLA GQRTLNDQVQ SEQRAVEASQ
IAYELAGLRF QEGVDDYLTL LDTHRMLYGA QQRLVRTRLM QQLNIINLYK ALGGGWREYS
EKKQG
|
|---|
| |