| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_B0092 |
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| Symbol | |
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| ID | 6870897 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011204 |
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| Strand | - |
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| Start bp | 52238 |
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| End bp | 54073 |
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| Gene Length | 1836 bp |
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| Protein Length | 611 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 642783230 |
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| Product | TaxB |
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| Protein accession | YP_002213924 |
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| Protein GI | 198241714 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 89 |
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| Fosmid unclonability p-value | 0.393332 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTTTAA AACTCCCAGA TAAAGGCCAG TGGGCTTTTA TCGGTCTGGT TATGTGTCTC
GTGACATATT ATACTGGTTC TGTTGCTGTT TACTTCCTGA ACGGAAAAAC GCCGCTTTAT
ATATGGAAAA ATTTTGATTC CATGCTCCTG TGGCGAATAA TAACAGAGAG TAATATACGG
ACAGATATCA GGTTAACCGC TATCCCCTCT CTTTTATCAG GTATGGTTTC GTCTCTCATC
GTGCCTGTTT TTATTATCTG GCAACTGAAT AAAACAGATG TTGCTCTTTA TGGTGACGCG
AAGTTTGCCA GTGATAATGA TTTAAGAAAA TCGAAACTTC TGAAATGGGA GAAAGAAAAC
GATACTGATA TTCTCGTCGG GGTATATAAA GGTAAATACC TGTGGTATAC CGCACCAGAT
TTTGTATCAC TTGGCGCAGG AACCCGCGCA GGTAAAGGTG CCGCCATTGG TATCCCTAAT
CTTCTGGTCA GAAAACACTC TCTGATTGCG TTAGATCCAA AACAGGAATT GTGGAAAATC
ACCAGTAAGG TGCGTGAAAT ACTGCTGGGT AATAAAGTTT ATCTGCTCGA CCCTTTCAAC
AGTAAAACAC ACCAGTTTAA TCCCCTTTTC TATATTGATT TAAAAGCGGA GAGTGGGGCT
AAGGATCTGC TTAAACTGAT TGAAATTCTG TTTCCGTCTT ATGGCATGAC AGGGGCAGAA
GCGTACTTTA ATAATCTTGC GGGTCAATAC TGGACAGGAC TGGCTAAGTT GCTTCATTTC
TTTATTAACT ATGAGCCGCC CTGGCTTAAT GAGTTCGGGC TTAAACCCGT TTTCTCAATC
GGTTCTGTCG TCGACTTGTA CAGCAATATT GACCGGGAAC TGATACTCAG TAAGCGGGAA
GAACTGGAGG GAACAAACGG GCTTGATGAA AACGCGTTGT ATCATTTGCG CGATGCCCTG
ACCAAAATCA GGGAATATCA CGAAACGGAA GATGAACAGC GTTCAAGCAT TGATGGTTCT
TTCCGTAAGA AAATGAGCCT GTTTTATCTC CCAACCGTTC GTAAATGTAC TGATGGTAAT
GATTTCGATC TCCGTCAGTT GCGACGGGAA GATATCACTG TTTATGTCGG TGTTAATGCG
GAAGATATAT CACTGGCTTA CGATTTTCTG AACCTGTTTT TCAACTTCGT TGTTGAAGTG
ACATTGCGTG AAAATCCTGA TTTTGATCCC ACCCTGAAAC ATGACTGTCT GATGTTTCTT
GATGAGTTCC CTTCGATTGG TTATATGCCA ATTATTAAAA AGGGGTCAGG GTATATTGCA
GGTTTTAAAC TTAAGCTTCT GACAATTTAT CAGAATATCA GTCAGCTAAA TGAAATCTAT
GGTATTGAGG GAGCCAAAAC GCTGATGAGT GTTCATCCAT GCCGTATTAT CTATGCTGTC
AGCGAAGAGG ACGATGCCGC GAAGATATCA GAAAAACTTG GGTATATTAC TACTACCTCA
AAGAGCACAA GCAAGAGCCG GGGACGCTCA ACATCACAGG GCGAATCAGA AAGTGAAGCC
CGAAGAGCTC TGGTGCTTCC ACAGGAGCTG GGAACGCTGG ACTTTAAAGA AGAGTTTATC
ATCCTGAAGG GAGAGAACCC TGTTAAAGCA GAAAAGGCAC TTTATTACCT TGATCCGTAT
TTTATGGACA GATTAATGAA GGTGAGTCCC AAACTGGCAT CATTGACGAT GGAACTAAAT
AAGACGGAAA AAATATTTGG TGTGAAAGGG CTTAAATATC CGTCAAAAGA AAAAATGCTC
TCCGTAGGAG AGCTGGAGTC TGAGGTTTTG CTATGA
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| Protein sequence | MSLKLPDKGQ WAFIGLVMCL VTYYTGSVAV YFLNGKTPLY IWKNFDSMLL WRIITESNIR
TDIRLTAIPS LLSGMVSSLI VPVFIIWQLN KTDVALYGDA KFASDNDLRK SKLLKWEKEN
DTDILVGVYK GKYLWYTAPD FVSLGAGTRA GKGAAIGIPN LLVRKHSLIA LDPKQELWKI
TSKVREILLG NKVYLLDPFN SKTHQFNPLF YIDLKAESGA KDLLKLIEIL FPSYGMTGAE
AYFNNLAGQY WTGLAKLLHF FINYEPPWLN EFGLKPVFSI GSVVDLYSNI DRELILSKRE
ELEGTNGLDE NALYHLRDAL TKIREYHETE DEQRSSIDGS FRKKMSLFYL PTVRKCTDGN
DFDLRQLRRE DITVYVGVNA EDISLAYDFL NLFFNFVVEV TLRENPDFDP TLKHDCLMFL
DEFPSIGYMP IIKKGSGYIA GFKLKLLTIY QNISQLNEIY GIEGAKTLMS VHPCRIIYAV
SEEDDAAKIS EKLGYITTTS KSTSKSRGRS TSQGESESEA RRALVLPQEL GTLDFKEEFI
ILKGENPVKA EKALYYLDPY FMDRLMKVSP KLASLTMELN KTEKIFGVKG LKYPSKEKML
SVGELESEVL L
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