Gene SeD_B0042 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_B0042 
Symbol 
ID6870924 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011204 
Strand- 
Start bp23553 
End bp24374 
Gene Length822 bp 
Protein Length273 aa 
Translation table11 
GC content62% 
IMG OID642783190 
ProductVagD 
Protein accessionYP_002213884 
Protein GI198241645 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones99 
Fosmid unclonability p-value0.832573 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCACCGC AGCTCCTGTG CCTGGGCGGC GCTGAATCTA GCGCGTGCCA GCAGAGCGTC 
CAGCGCGTCG CCGACGTCAG TCTCATACCG GGAGGCCGTG AGCGGAAACG CCTCCGCACA 
TTTTGTTTTA CAGCGTTAAC TTACCCAGTC TTCCAGTACC AGGCCCGGTA CCCGCTCAAA 
TTCCCGCGTA TTATTCGTCA CCAGCACGGC ACCGGCGGCG ATGGCATGCC CGGCAATCGC 
CGTGTCGTTC GGACCGATCG GCGTCCCGGC GAGGCACAGT GCCACCTTAA TCTCCGTGGT 
GGCGTCTACC GCAGCGCGAT CCCAGGGCAG GATGGCATCG AGGCGGGCGC AGAACGCGTC 
GACCAGCTGG ACGAGACGCG GCGAGGCCTT AGGTCCGGTG GCGCCGAAGC GCATCTCGGA 
GTAGGTGATG GCCGAGATCA CGATACGGTG GCCGCGCAGC ACCGCCTGCT CAAGGCGCTT 
CAGCACCGCT TCCGACTGCT CGCGCATGAT GAACGAACAG ATACAGGTAT CGAGCATATA 
GGTCTTCGTA CGTGGCTGTT TCATAGCTCA AAGCGTCCTT CGTCGCTGAC AACGTCCTCG 
CGCTCCGCCA TAAAGTCCGG GTCAGCTTTT TCGAGCTGCG CGAACGAGCC CCAGGTCGGC 
CGGACAGGGC GCAGGATGAT GCTGTCCCCT TCCCGGACGA TTTCCAGCTC GCTCACCCCC 
TCAAAATCCA GATCGCGTGG AAGGCGGATG GCGCGGTTGT TGCCGTTTTT AAAAATGGAT 
ACGGTTCTCA TGATTCTCTC CCGGGTAAGT GTGGATATGT GA
 
Protein sequence
MPPQLLCLGG AESSACQQSV QRVADVSLIP GGRERKRLRT FCFTALTYPV FQYQARYPLK 
FPRIIRHQHG TGGDGMPGNR RVVRTDRRPG EAQCHLNLRG GVYRSAIPGQ DGIEAGAERV 
DQLDETRRGL RSGGAEAHLG VGDGRDHDTV AAQHRLLKAL QHRFRLLAHD ERTDTGIEHI 
GLRTWLFHSS KRPSSLTTSS RSAIKSGSAF SSCANEPQVG RTGRRMMLSP SRTISSSLTP 
SKSRSRGRRM ARLLPFLKMD TVLMILSRVS VDM