Gene SeD_A4577 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A4577 
SymbolhupA 
ID6873151 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp4417145 
End bp4417417 
Gene Length273 bp 
Protein Length90 aa 
Translation table11 
GC content48% 
IMG OID642787484 
Producttranscriptional regulator HU subunit alpha 
Protein accessionYP_002218086 
Protein GI198243874 
COG category[L] Replication, recombination and repair 
COG ID[COG0776] Bacterial nucleoid DNA-binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones63 
Fosmid unclonability p-value0.511964 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAAGA CTCAACTGAT TGATGTAATT GCAGACAAAG CAGAACTGTC CAAAACCCAG 
GCTAAAGCTG CTCTGGAATC CACTCTGGCT GCTATTACTG AGTCTCTGAA AGAAGGCGAT
GCTGTACAAC TGGTTGGTTT CGGTACCTTC AAAGTGAACC ACCGTGCTGA GCGCACTGGC
CGTAACCCAC AGACCGGTAA AGAAATCAAA ATCGCCGCCG CTAACGTACC GGCGTTTGTT
TCTGGTAAAG CTCTGAAAGA CGCAGTTAAG TAA
 
Protein sequence
MNKTQLIDVI ADKAELSKTQ AKAALESTLA AITESLKEGD AVQLVGFGTF KVNHRAERTG 
RNPQTGKEIK IAAANVPAFV SGKALKDAVK