Gene SeD_A4177 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A4177 
SymboluhpC 
ID6873783 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp4020741 
End bp4022069 
Gene Length1329 bp 
Protein Length442 aa 
Translation table11 
GC content60% 
IMG OID642787110 
Productregulatory protein UhpC 
Protein accessionYP_002217736 
Protein GI198244096 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2271] Sugar phosphate permease 
TIGRFAM ID[TIGR00881] phosphoglycerate transporter family protein 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones69 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTTCGT TTTTAAAAGC CCCGGCCAAC GCGCCGCTCA TCACCGATAA GCACGAGGTT 
GACGCCCGCT ATCGCTACTG GCGGCGGCAT ATCCTGATCA CCATTTGGTT GGGTTACGCG
CTGTTCTATT TCACCCGTAA AAGCTTTAAC GCCGCCGCGC CGGAAATCCT TGCCAGCGGC
ATTCTGACCC GCAGCGATAT CGGCCTGCTG GCGACGCTGT TTTACATCAC CTACGGGGTG
TCGAAATTTG TCTCCGGCAT CGTTAGCGAT CGCTCTAACG CTCGCTATTT TATGGGCATC
GGGCTGATTG CGACCGGCGT AGTGAATATT CTGTTCGGCT TCTCGACCTC GCTGTGGGCC
TTTGCTCTGC TATGGGCGCT GAACGCCTTT TTCCAGGGGT TTGGATCGCC GGTTTGCGCC
CGTTTGCTGA CCGCCTGGTA CTCGCGTACC GAGCGCGGCG GCTGGTGGGC GTTATGGAAC
ACCGCGCACA ATGTCGGCGG GGCGCTGATC CCTCTCGTTA TGGCCGCTGT CGCCCTGCAT
TATGGCTGGC GCGTCGGGAT GATGGTGGCC GGATTGCTTG CCATCGGGGT GGGCATGGTC
CTCTGCTGGC GGCTGCGCGA CCGTCCGCAG GCGATTGGTT TACCGCCGGT AGGGGACTGG
CGGCACGATG CGCTGGAGGT CGCCCAACAG CAAGAGGGCG CGGGGCTAAG TCGCAAAGAA
ATCCTCGCTA AATATGTGCT GTTGAATCCC TATATCTGGC TGCTTTCGCT ATGTTATGTC
TTAGTGTACG TGGTGCGCGC GGCGATCAAC GACTGGGGCA ACCTGTATAT GTCCGAGACG
CTGGGCGTAG ATTTGGTCAC GGCCAACACG GCAGTATCGA TGTTTGAGCT GGGTGGATTT
ATCGGCGCGC TGGTGGCGGG CTGGGGCTCG GACAAACTCT TCAACGGCAA CCGCGGACCG
ATGAATTTAA TCTTCGCCGC CGGGATTTTG CTCTCTGTGG GTTCGCTGTG GCTGATGCCG
TTCGCCAGCT ACGTGATGCA GGCGGCCTGT TTCTTCACCA CCGGTTTCTT TGTCTTCGGC
CCGCAGATGC TCATTGGCAT GGCGGCGGCG GAGTGCTCGC ATAAAGAGGC GGCGGGCGCG
GCCACCGGCT TTGTCGGCCT GTTCGCCTAT CTCGGCGCGT CGCTTTCCGG CTGGCCGTTA
GCGAAAGTAC TGGAGATCTG GCACTGGACC GGTTTTTTTG CGGTCATCGC CATCGCGGCG
GGGATCTCTG CGCTATTGCT GCTGCCATTT CTGAACGCTC AGGCCCCGCG CGAGACCAGC
GAAGCGTGA
 
Protein sequence
MLSFLKAPAN APLITDKHEV DARYRYWRRH ILITIWLGYA LFYFTRKSFN AAAPEILASG 
ILTRSDIGLL ATLFYITYGV SKFVSGIVSD RSNARYFMGI GLIATGVVNI LFGFSTSLWA
FALLWALNAF FQGFGSPVCA RLLTAWYSRT ERGGWWALWN TAHNVGGALI PLVMAAVALH
YGWRVGMMVA GLLAIGVGMV LCWRLRDRPQ AIGLPPVGDW RHDALEVAQQ QEGAGLSRKE
ILAKYVLLNP YIWLLSLCYV LVYVVRAAIN DWGNLYMSET LGVDLVTANT AVSMFELGGF
IGALVAGWGS DKLFNGNRGP MNLIFAAGIL LSVGSLWLMP FASYVMQAAC FFTTGFFVFG
PQMLIGMAAA ECSHKEAAGA ATGFVGLFAY LGASLSGWPL AKVLEIWHWT GFFAVIAIAA
GISALLLLPF LNAQAPRETS EA