Gene SeD_A4145 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A4145 
Symbol 
ID6871897 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp3990607 
End bp3991644 
Gene Length1038 bp 
Protein Length345 aa 
Translation table11 
GC content51% 
IMG OID642787085 
Productvirulence protein 
Protein accessionYP_002217711 
Protein GI198243175 
COG category[R] General function prediction only 
COG ID[COG3943] Virulence protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.373189 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones68 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGACA AATACTTAAC CCAATCCCCG GCAGGCGAAT TTGTTATGTT TGCCAGCGAT 
GACGGTGAAG TTCGTGTGGA GTGCCGCTTT GAGCAAGAGA CGCTATGGCT CCCTCAGGCA 
ACCATCGCCA ACCTTTATCA GATCACTCCC CAGGCAGTTA CACAGCACAT TAAAGCGATC 
TATGAAGAAG GCGAACTTGA GCAAAACGCA ACCTGTAAGT CTTACTTACA AGTTCAACAG 
GAAGGTAGCC GTCAGGTAAG CCGCAACAGG CTTCACTACA GCCTGCCTGT CATCCTTGCT 
GTCGGCTACC GCGTTCGTTC CCCGCGCGGC ACACAGTTCC GCCAGTGGGC AACCCAGACG 
CTCCAGAAAT ACCTGATCAA AGGTTTTGTG ATGGACGATG AGCGCCTGAA AAATCCGCCC 
GTGGGTTCAT CGGCTGTACC CGACTATTTT GATGAGATGC TGGAGCGTAT CCGCGATATT 
CGCGCCAGCG AACGTCGGGT TTATTTGCGG GTACGAGAGA TCTTTGCGTT AGCCGCCGAC 
TATCAACCAT CGCTCAAAGA AACCACGCAA TTTTTTCAAA CCATCCAGAA CAAGTTGCAT 
TTTGCCTGTA CCGGACATAC CGCTGCTGAA CTCATTCATC AGCGTGCTGA CGCCAGCCAG 
CCGCATATGG GGCTGACCAG CTATAAAGGT GAAGAGGTAC GTAAGGGTGA CGTGACGGTG 
GCAAAAAATT ATCTCACTCA GGATGAAGTC AGCGAGCTTA ACCGCGTAGT TAACATGTGG 
CTGGATTTTG CCGAGGATCA GGCCCGTCGT CGTCAGCAGA TCTTTTTACG CGACTGGCAG 
GATAAGCTGG ATCAGTTCCT GCAATTTAAC GACCGTGAGG TTTTACAAGG CGCAGGTAAA 
GTCACTAAGA AAATGGCCGA TGAAAAAGCG CAGGCGGAAT ATAGTCAGTT TGCTGAACAA 
CAACGGCGCT TAAAAGAAGC CGAAGGTGAG AAGGATATCG CCGGTTTGCT ACAATGGAAA 
ACAGAACCTA AAAAGTAG
 
Protein sequence
MADKYLTQSP AGEFVMFASD DGEVRVECRF EQETLWLPQA TIANLYQITP QAVTQHIKAI 
YEEGELEQNA TCKSYLQVQQ EGSRQVSRNR LHYSLPVILA VGYRVRSPRG TQFRQWATQT 
LQKYLIKGFV MDDERLKNPP VGSSAVPDYF DEMLERIRDI RASERRVYLR VREIFALAAD 
YQPSLKETTQ FFQTIQNKLH FACTGHTAAE LIHQRADASQ PHMGLTSYKG EEVRKGDVTV 
AKNYLTQDEV SELNRVVNMW LDFAEDQARR RQQIFLRDWQ DKLDQFLQFN DREVLQGAGK 
VTKKMADEKA QAEYSQFAEQ QRRLKEAEGE KDIAGLLQWK TEPKK