Gene SeD_A4108 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A4108 
Symbol 
ID6871558 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp3955649 
End bp3956446 
Gene Length798 bp 
Protein Length265 aa 
Translation table11 
GC content46% 
IMG OID642787055 
Productlipopolysaccharide core biosynthesis protein 
Protein accessionYP_002217682 
Protein GI198244597 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.184564 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones82 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTGAGC TGAAAGCGCC GTTAACCACA CTATGGCGCG GTAAAGATGC TTTTGAGGAA 
GTAAAAACGT TACAGGGCGA AGTGTTCAGA GAGCTGGAGA CGCGTCGAAC ATTGCGGTTT 
GAGCTGGACG GTAAAAGCTA CTTCCTGAAG TGGCATAAAG GTACTTCGCT GAAAGAAATT 
GTGAAGAACC TGATTTCGTT ACGTATGCCT GTTCTGGGCG CTGACAGAGA ATGGCACGCC 
ATTCATCGTC TACATGAGCT GGGCGTTGAT ACGATGCACG GCGTTGGTTT TGGTGAAAAA 
GGCGTAAACC CGCTAACCAG AACATCATTT ATTATCACCG AAGATTTAAC GCCTACCATT 
AGCCTTGAAG ACTACTGCGC TGACTGGGCT GTTAATCCAC CGGACGCGCA GGTGAAGTGG 
ATGATCATTA AGCGTGTTGC GACTATGGTA CGTAAAATGC ACGCCGGGGG AATTAACCAT 
CGCGACTGTT ATATTTGCCA CTTTCTTCTG CATTTACCTT TCACTGGTCG CGAAGAGGAT 
TTAAAAATCT CCGTAATCGA CCTGCATCGC GCGCAGATAC GCCAGCGTGT TCCCCTTCGC 
TGGCGTGACA AAGATTTAAT TGGGCTTTAT TTTTCTTCAA TGAATATTGG CCTGACTCAG 
CGAGATATAT TCCGGTTTAT GCGTGAGTAT TTCTCTCTTC CCCTGCGAGA GATTTTGCAA 
AAAGAATCGG GGTTGATTCA CCAGGCGGAT GTTAAAGCCG CTCGAATTAA AGAAAGAACA 
ATAAGAAAAA ATCTGTAA
 
Protein sequence
MVELKAPLTT LWRGKDAFEE VKTLQGEVFR ELETRRTLRF ELDGKSYFLK WHKGTSLKEI 
VKNLISLRMP VLGADREWHA IHRLHELGVD TMHGVGFGEK GVNPLTRTSF IITEDLTPTI 
SLEDYCADWA VNPPDAQVKW MIIKRVATMV RKMHAGGINH RDCYICHFLL HLPFTGREED 
LKISVIDLHR AQIRQRVPLR WRDKDLIGLY FSSMNIGLTQ RDIFRFMREY FSLPLREILQ 
KESGLIHQAD VKAARIKERT IRKNL