Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A4057 |
Symbol | |
ID | 6873474 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 3898932 |
End bp | 3900209 |
Gene Length | 1278 bp |
Protein Length | 425 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642787006 |
Product | 2,3-diketo-l-gulonate trap transporter large permease yian |
Protein accession | YP_002217633 |
Protein GI | 198242335 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.998541 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 61 |
Fosmid unclonability p-value | 0.502761 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGTGG TGATATTTCT CTGCTGCCTG CTCGGCGGGA TCGCGATAGG TTTACCCATC GCCTGGTCGC TGCTGCTTTG CGGCGCTGCT CTGATGGCAT ACCTGGATAT GTTTGACGTG CAGATTATGG CGCAAACCCT GGTTAACGGC GCGGACAGTT TCTCCCTGCT GGCTATTCCC TTTTTTGTTT TGGCCGGTGA AATCATGAAC GCGGGCGGCC TGTCAAAGCG AATTGTCGAC CTGCCGATGA AGCTGGTCGG CCATAAACCC GGCGGCCTGG GCTACGTGGG CGTTATTGCG GCAATGATTA TGGCCAGCCT TTCCGGCTCT GCGGTAGCAG ATACCGCTGC GGTCGCCGCG CTGCTGGTGC CGATGATGCG CTCCGCAAAC TACCCGATCA ACCGCTCCGT TGGGTTAATC GCTTCCGGCG GGATCATTGC GCCAATTATT CCACCCTCGA TTCCTTTTAT TATCTTCGGC GTTTCCAGCG GCTTGTCGAT CAGCAAGCTG TTTATGGCCG GGATCGCACC GGGCATCATG ATGGGCGCGG CGCTTATGCT CACCTGGTGG TGGCAGGCCG GGCGATTAAA TCTCCCTTCT CAGCCTAAAG CAACACCGCG TGAAATCTGG CAATCATTGG TTTCAGGTAT CTGGGCGCTG TTTTTACCGG TGATTATTAT CGGCGGCTTC CGTTCCGGAC TTTTCACGCC AACGGAGGCA GGGGCGGTTG CCGCGTTTTA CGCCCTCTTT GTCGCCGTTG TTATCTATCG GGAATTAACG TTTTCCAGTC TCTACCACGT GCTGGTCAAT GCCGCCAAAA CGACGTCAGT CGTCATGTTT CTGGTGGCCG CGGCCCAGGT ATCCGCCTGG CTGATTACGA TCGCGGAATT ACCCATGATG GTGTCAGATT TGCTGCAGCC GCTGGTCGAC TCTCCGCGAC TCTTATTTAT CGTCATTATG ATCTCAATTA TGGTCGTCGG TATGGTGATG GATTTAACGC CAACGGTGTT AATTCTTACC CCTGTATTAT TGCCATTAGT TAAAGAAGCC AATATTGACC CGATTTATTT CGGCGTCATG TTCATTATTA ACTGCTCTAT TGGATTAATC ACACCGCCCG TTGGCAACGT CCTCAACGTT ATTTCCGGGG TAGCAAAATT GAAATTTGAT GACGCGGTAA GAGGCGTATT CCCTTACGTT GTCGTACTGA TGTCGCTGCT GGTTTTATTT ATTTTTATTC CCGAGCTAAT TATCACACCG CTTAAATGGA TTAATTAA
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Protein sequence | MAVVIFLCCL LGGIAIGLPI AWSLLLCGAA LMAYLDMFDV QIMAQTLVNG ADSFSLLAIP FFVLAGEIMN AGGLSKRIVD LPMKLVGHKP GGLGYVGVIA AMIMASLSGS AVADTAAVAA LLVPMMRSAN YPINRSVGLI ASGGIIAPII PPSIPFIIFG VSSGLSISKL FMAGIAPGIM MGAALMLTWW WQAGRLNLPS QPKATPREIW QSLVSGIWAL FLPVIIIGGF RSGLFTPTEA GAVAAFYALF VAVVIYRELT FSSLYHVLVN AAKTTSVVMF LVAAAQVSAW LITIAELPMM VSDLLQPLVD SPRLLFIVIM ISIMVVGMVM DLTPTVLILT PVLLPLVKEA NIDPIYFGVM FIINCSIGLI TPPVGNVLNV ISGVAKLKFD DAVRGVFPYV VVLMSLLVLF IFIPELIITP LKWIN
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