| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A3992 |
|---|
| Symbol | |
|---|
| ID | 6871708 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | - |
|---|
| Start bp | 3833669 |
|---|
| End bp | 3837211 |
|---|
| Gene Length | 3543 bp |
|---|
| Protein Length | 1180 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642786948 |
|---|
| Product | cellulose synthase subunit BcsC |
|---|
| Protein accession | YP_002217576 |
|---|
| Protein GI | 198241977 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
|---|
| Fosmid unclonability p-value | 0.416047 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAAGT TCACGTTAAG TCTCATGCAC GCTTTTTTGC CGGCTGGCGG TCGAAACGCT
TTACCTGGCA AAAGGGGCGT TTCTCGGGCA TTGTTGGGTT TATCGCTTGG TATGGTGCTA
ACACCGCTTG CCGGCGCAGC GACCTCCGCG CAGCAACAGT TGCTGGAGCA GGTTCGGCTG
GGCGAGGCCA CGCACCGTGA GGACTTAGTC CGTCAGTCGC TCTATCGCCT GGAGCTGATC
GACCCCAATG ATCCACAGGT TATCGCCGCC CGTTTCCGCT ATCTGTTGCG CCAGGGGGAT
AGCGACGGGG CACAGAAGCT ACTTGACCGG CTGGCGCAAC TGGCGCCGGA GTCGACGGCG
TATCAATCTT CCCGCACCGC GATGCTGCTC TCCACGCCAC AAGGACGTCA GTCTTTGCAG
GAGGCGCGTT TACTGGCGAC GACCGGCCAT ACTGAACAAG CGATCGCCAG CTACGACAAG
TTGTTTAAAG GTTATCCGCC GGAGGGCGAA CTGGCGGTCG AATACTGGAC GACCGTGGCG
AAATTGCCCG CCCGCCGTCA CGAAGCGATT AACCAGCTAC AGAAAATCAA TGCCGTCAGT
CCGGGTAATA ACGCTCTGCA AAATGCGCTG GCGCAACTGT TGTTCGCCAG CGGGCGGCGC
GATGAGGGAT TTGCGGTGCT AAAACAGATG GCGAAATCCA GTACGGGACG CAGCGCGGCC
TCCGCCATCT GGTACCAGCA GATAAAAGCT CTCCCGGTGA GCGACGCCAG CGTAAAAGCG
TTGCAAGACT ATCTGACGCA GTTTAGCGAA GGCGATAGCG TGTCTGCCGC CCGCGCCCAG
CTTAGCGAGC AGCAAAAACA GTTAGCCGAT CCGGCGTTCC GCGCGCGCTC GCAGGGCATC
GCGGCGGTTA ATGCCGGAGA AGGCGGTAAG GCCATTGCGC AATTGCAGCA GGCGGTGAGC
GCCCGGCAGG ACGACAGCGA GGCGGTCGGC GCGCTGGGGC AGGCATACTC ACAGCGTGGC
GATCGCGCCC GCGCCGTCGC GCAGTTTGAA AAAGCGCTGG CGATGGCGCC GCACAGCAGC
AGCCGCGATA AGTGGGAGAG CCTGCTGAAG GTCAATCGCT ACTGGCTGTT AATTCAGCAG
GGCGACGCGG CCTTAAAAGC GAATAATCTG GCCCAGGCGG AGCGTTTCTA TCAGCAGGCG
CGAGCGGTGG ATAACACCGA CAGCTACGCG GTACTGGGGC TGGGGGATGT GGCGATGGCG
CGCAAAGATA ATGCCGCCGC CGAACGTTAT TATCAGCAGA CGCTGCGTAT GGATAGCGGT
AATACCAATG CTGTACGCGG GCTGGCGAAT CTTTATCGCC AGCAGTCGCC GCAAAAAGCC
GCCGCGTTTA TCGCTTCTCT TTCCGCCAGC CAGCGGCGCA GTATCGACGA TATCGAACGC
AGTCTGGAAA ATGACCGTCT GGCGCAGCAG GCGGAAACGC TGGAAAGCGA GGGCAAATGG
GCGCAGGCCG CAGAACTGCA CCGTCGCCGG CTGGCATTAG ATCCGGGGAG CGTGTGGGTG
ACGTACCGAC TGTCACGCGA TCTGTGGCAG GCCGGGCAGC ACGCCCAGGC CGATGCGCAA
ATGCGCTCTC TGGCGCAGCA GAAGCCAAAC GATCCGGAAC AGGTCTATGC TTATGGGCTT
TATCTTTCCG GCAGCGATCG GGACCGGGCG GCGCTGGCGC ATCTCAATAC CCTACCGACC
AGCCAGTGGA ACAGCAATAT TCAGGAACTG GCGGGCCGAT TGCAAAGTAA CCAGGTGCTG
GAAAGCGCTA ACCGCTTGCG CGATAGCGGC AAAGAACGCG AAGCGGAAGC GTTGTTACGT
CAGCAGCCGC CCTCTACGCG CATTGCGTTA ACGTTGGCGG ACTGGGCGCA GCAGCGTGGC
GATAATGCGG CGGCCCGCGC CGCTTATGAC GCCGTTCTGG CGCGGGAACC GGGTAATGTC
GATGCCATGC TGGGGCGGGT GGAAATCGAC ATCGCACAGG GCGATAACGC TGCGGCGCGC
GCTCAGCTGG CGGCGCTGCC TGCGTCGCAA ATCACCTCTA TTAACATGCA GCGCCGCGTC
GCGCTGGCGC AGCTCCAGCT TGGCGATATC ACGGCGGCGG CGCGGACCTT CAACCGCATT
ACGCCGCAGG CAAAAGCACA GCCGCCATCA ATGGAAAGCG CGATGGTATT GCGTGACGCC
GCCGCTTTTC AGGCGCAAAC GGGCGAGCCG CAGCGGGCGT TGGAAACCTA CAAAGAGGCA
ATGGTCGCCG CGGCGATTAC GCCGGTTCGT CCCCTGGATA ACGATACCTT TACCCGCCTG
ACGCGCAATG ATGAAAAAGA TGACTGGCTA AAACGCGGCG TGCGTAGCGA TGCGGCGGAG
TTGTACCGTC AGCAGGATCT CAATGTCACG TTGGCGCACG ATTATTGGGG GTCGAGCGGG
ACTGGCGGCT ACTCCGATCT GAAGGCGCAT ACCACGATGC TTCAGGTGGA TGCGCCCTGG
TCGGACGGAC GGGCGTTCTT TCGTACTGAT ATGGTGAATA TGGATGTTGG CCGCTTCTCT
ACGGATGCGG ATGGAAAATA CGATAATAAC TGGGGTACCT GTACGCTGGA GAAATGCAGC
GGACATCGTA GCCAGGCCGA TACGGGCGCG AGCGTGGCGG TCGGCTGGCA GAATGAGACC
TGGCGCTGGG ATATCGGCAC GACGCCGATG GGCTTTAATG TCGTTGATGT GGTCGGCGGC
GTCAGCTATA GCGACGATAT CGGGCCGTTG GGTTATACCC TGAACGCGCA TCGTCGCCCG
ATCTCCAGCT CGCTGCTGGC GTTTGGCGGG CAAAAGGACG CCAGCAGCAA TACCGGCACC
AAATGGGGCG GCGTGCGGGC CAACGGCGGC GGCGTCAGTC TCAGCTATGA TAAAGGCGAA
GCAAACGGTG TCTGGGCGTC GCTCAGCGGC GACCAGTTGA GCGGTAAAAA TGTGGAAGAT
AACTGGCGCG TGCGCTGGAT GACCGGTTAT TACTATAAGG TGATTAACGA GAATAACCGC
CGCGTTACCG TCGGGCTGAA TAACATGATC TGGCATTACG ACAAAGATTT GAGCGGTTAT
TCACTGGGTC AGGGCGGTTA TTATAGCCCG CAGGAATACC TGTCGTTTGC GGTGCCGGTG
ATGTGGCGGC AGCGTACGGA AAACTGGTCG TGGGAGCTGG GCGGCTCGGT ATCCTGGTCG
CACTCCCGCA ACCGTACCAT GCCGCGTTAT CCGCTGATGA ATTTGATCCC GGCGGATTAT
CAGGAGGATG CGCGTGACCA GACCAACGGC GGCGGCAGCA GCCAGGGATT TGGCTATACC
GCGCGGGCGC TCATTGAACG CCGGGTCACT GCCAACTGGT TTGTGGGTAC GGCTGTCGAT
ATTCAGCAGG CGAAAGATTA TACCCCCAGT CATCTGCTGC TGTATGTCCG TTATTCCGCG
GCGGGCTGGC AGGGGGATAT GGATTTACCG CCGCAGCCTC TGGTGCCTTA CGCTGACTGG
TAA
|
|---|
| Protein sequence | MRKFTLSLMH AFLPAGGRNA LPGKRGVSRA LLGLSLGMVL TPLAGAATSA QQQLLEQVRL
GEATHREDLV RQSLYRLELI DPNDPQVIAA RFRYLLRQGD SDGAQKLLDR LAQLAPESTA
YQSSRTAMLL STPQGRQSLQ EARLLATTGH TEQAIASYDK LFKGYPPEGE LAVEYWTTVA
KLPARRHEAI NQLQKINAVS PGNNALQNAL AQLLFASGRR DEGFAVLKQM AKSSTGRSAA
SAIWYQQIKA LPVSDASVKA LQDYLTQFSE GDSVSAARAQ LSEQQKQLAD PAFRARSQGI
AAVNAGEGGK AIAQLQQAVS ARQDDSEAVG ALGQAYSQRG DRARAVAQFE KALAMAPHSS
SRDKWESLLK VNRYWLLIQQ GDAALKANNL AQAERFYQQA RAVDNTDSYA VLGLGDVAMA
RKDNAAAERY YQQTLRMDSG NTNAVRGLAN LYRQQSPQKA AAFIASLSAS QRRSIDDIER
SLENDRLAQQ AETLESEGKW AQAAELHRRR LALDPGSVWV TYRLSRDLWQ AGQHAQADAQ
MRSLAQQKPN DPEQVYAYGL YLSGSDRDRA ALAHLNTLPT SQWNSNIQEL AGRLQSNQVL
ESANRLRDSG KEREAEALLR QQPPSTRIAL TLADWAQQRG DNAAARAAYD AVLAREPGNV
DAMLGRVEID IAQGDNAAAR AQLAALPASQ ITSINMQRRV ALAQLQLGDI TAAARTFNRI
TPQAKAQPPS MESAMVLRDA AAFQAQTGEP QRALETYKEA MVAAAITPVR PLDNDTFTRL
TRNDEKDDWL KRGVRSDAAE LYRQQDLNVT LAHDYWGSSG TGGYSDLKAH TTMLQVDAPW
SDGRAFFRTD MVNMDVGRFS TDADGKYDNN WGTCTLEKCS GHRSQADTGA SVAVGWQNET
WRWDIGTTPM GFNVVDVVGG VSYSDDIGPL GYTLNAHRRP ISSSLLAFGG QKDASSNTGT
KWGGVRANGG GVSLSYDKGE ANGVWASLSG DQLSGKNVED NWRVRWMTGY YYKVINENNR
RVTVGLNNMI WHYDKDLSGY SLGQGGYYSP QEYLSFAVPV MWRQRTENWS WELGGSVSWS
HSRNRTMPRY PLMNLIPADY QEDARDQTNG GGSSQGFGYT ARALIERRVT ANWFVGTAVD
IQQAKDYTPS HLLLYVRYSA AGWQGDMDLP PQPLVPYADW
|
|---|
| |