Gene SeD_A3960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3960 
Symbol 
ID6874093 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp3795468 
End bp3796535 
Gene Length1068 bp 
Protein Length355 aa 
Translation table11 
GC content61% 
IMG OID642786917 
Productsecretion protein HlyD family protein 
Protein accessionYP_002217545 
Protein GI198244212 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones94 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACAAAA TGAAGCGTCA TCTGGTGTGG TGGGGAGCGG GGATTCTTGT AGCGGTGGCC 
GCGATAGCCT GGTGGATGCT GCGCCCTGCG GGAATACCGG AGGGATTTGC CGCCAGCAAC 
GGCAGAATTG AAGCCACCGA AGTGGATATT GCCACTAAGA TTGCCGGGCG TATTGATACC 
ATCCTCGTTT CGGAAGGGCA GTTCGTTCGT CAGGGCGAGG TGCTGGCGAA AATGGATACC 
CGCGTGCTGC AGGAGCAGCG GCTGGAGGCG ATTGCGCAGA TTAAAGAGGC CGAGAGCGCG 
GTTGCCGCCG CCCGTGCTTT GCTGGAGCAA CGCCAGAGTG AAATGCGCGC CGCGCAGTCG 
GTCGTCAAAC AGCGGGAAGC TGAGCTGGAC TCCGTCTCTA AACGTCACGT GCGTTCTCGT 
TCGCTGTCGC AGCGTGGCGC GGTATCTGTA CAACAGTTAG ATGACGATCG CGCGGCGGCG 
GAAAGCGTGC GCGCCGCCCT GGAGACCGCC AAAGCGCAGG TATCTGCGGC AAAAGCGGCG 
ATTGAAGCGG CGCGTACCAG TATTATCCAG GCGCAAACGC GCGTGGAAGC GGCGCAGGCG 
ACCGAGCGGC GTATTGTCGC CGACATCGAC GACAGCGAAT TAAAAGCGCC GCGCGATGGA 
CGCGTGCAGT ACCGCGTTGC GGAGCCGGGC GAAGTGTTAT CGGCTGGCGG CCGGGTGTTG 
AACATGGTCG ATCTCAGAGA TGTTTATATG ACATTTTTCC TGCCGACCGA ACAGGCGGGG 
TTGTTGAAGA TCGGCGGCGA AGCGCGACTG GTGCTGGACG CCGCGCCGGA TCTGCGTATT 
CCGGCGACGA TCAGTTTTGT CGCCAGCGTG GCGCAGTTCA CGCCCAAAAC CGTGGAAACC 
CACGATGAAC GACTGAAGCT GATGTTCCGC GTCAAAGCGC GTATTCCGCC AGAGCTACTG 
CGACAGCATC TGGAATATGT CAAAACCGGT TTGCCGGGAA TGGCCTGGGT TCGTCTGGAT 
GAGCGCGTGC CCTGGCCTGA CGCTCTAAGC GTGAGGCTGT CGCAATGA
 
Protein sequence
MDKMKRHLVW WGAGILVAVA AIAWWMLRPA GIPEGFAASN GRIEATEVDI ATKIAGRIDT 
ILVSEGQFVR QGEVLAKMDT RVLQEQRLEA IAQIKEAESA VAAARALLEQ RQSEMRAAQS 
VVKQREAELD SVSKRHVRSR SLSQRGAVSV QQLDDDRAAA ESVRAALETA KAQVSAAKAA 
IEAARTSIIQ AQTRVEAAQA TERRIVADID DSELKAPRDG RVQYRVAEPG EVLSAGGRVL 
NMVDLRDVYM TFFLPTEQAG LLKIGGEARL VLDAAPDLRI PATISFVASV AQFTPKTVET 
HDERLKLMFR VKARIPPELL RQHLEYVKTG LPGMAWVRLD ERVPWPDALS VRLSQ