Gene SeD_A3855 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3855 
SymbolaroK 
ID6874936 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp3682166 
End bp3682687 
Gene Length522 bp 
Protein Length173 aa 
Translation table11 
GC content50% 
IMG OID642786820 
Productshikimate kinase I 
Protein accessionYP_002217448 
Protein GI198246005 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0703] Shikimate kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones1 
Plasmid unclonability p-value0.0000716125 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones78 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGAGA AACGCAATAT CTTTCTGGTT GGGCCTATGG GTGCCGGAAA AAGCACTATT 
GGGCGCCAGT TAGCTCAACA ACTCAATATG GAATTTTACG ATTCTGATCA AGAGATTGAG 
AAACGAACCG GAGCTGATGT GGGCTGGGTC TTCGATGTTG AAGGTGAAGA CGGCTTCCGT 
AATCGTGAAG AAAAAGTTAT CAACGAATTG ACGGAAAAAC AGGGTATTGT GCTGGCAACC 
GGCGGTGGCT CTGTAAAATC GCGTGAAACG CGTAACCGTC TCTCCGCGCG TGGCGTCGTG 
GTCTACCTTG AAACGACCAT CGAAAAACAA CTGGCGCGCA CGCAGCGTGA TAAAAAACGC 
CCGCTGTTGC AGGTTGAAGC ACCGCCTCGC GAAGTTCTGG AAGCGCTGGC TAACGAACGC 
AATCCGCTGT ACGAAGAGAT TGCCGACGTC ACCATTCGCA CCGACGATCA AAGCGCTAAG 
GTTGTGGCAA ACCAGATTAT TCATATGCTG GAAAGCAACT AA
 
Protein sequence
MAEKRNIFLV GPMGAGKSTI GRQLAQQLNM EFYDSDQEIE KRTGADVGWV FDVEGEDGFR 
NREEKVINEL TEKQGIVLAT GGGSVKSRET RNRLSARGVV VYLETTIEKQ LARTQRDKKR 
PLLQVEAPPR EVLEALANER NPLYEEIADV TIRTDDQSAK VVANQIIHML ESN