Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A3842 |
Symbol | nirB |
ID | 6872085 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 3664313 |
End bp | 3666856 |
Gene Length | 2544 bp |
Protein Length | 847 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 642786808 |
Product | nitrite reductase [NAD(P)H], large subunit |
Protein accession | YP_002217436 |
Protein GI | 198243194 |
COG category | [C] Energy production and conversion |
COG ID | [COG1251] NAD(P)H-nitrite reductase |
TIGRFAM ID | [TIGR02374] nitrite reductase [NAD(P)H], large subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.294363 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 67 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAAAG TCAGACTCGC TATTATCGGT AATGGTATGG TCGGCCACCG CTTTATTGAG GATCTCCTTG ATAAATCCGA CGCTAGCCTG TTCGACATTA CCGTGTTCTG TGAAGAACCC CGTAAAGCCT ATGACCGTGT CCACCTGTCA TCCTACTTCT CTCACCACAC CGCGGAAGAG CTCTCTCTGG TGCGTGAAGG ATTTTACGAG AAGCACGGCG TAAAGGTACT GGTTGGCGAA CGCGCAATTA CCATTAACCG TCAGGAGAAA GTGATTCACT CCAGCGCGGG TCGTACCGTT TATTATGACA AGCTGATCAT GGCGACCGGT TCCTATCCGT GGATCCCGCC GATTAAAGGC TCCGAAACCC AGGATTGCTT CGTTTACCGT ACCATTGAAG ACCTCAACGC TATCGAAGCC TGCGCCCGTC GCAGCAAGCG CGGGGCGGTG GTCGGCGGCG GTCTGCTGGG GCTGGAAGCC GCTGGCGCGC TGAAAAACCT CGGCGTGGAA ACGCACGTCA TTGAATTTGC GCCAATGCTG ATGGCGGAAC AACTCGATCA AATGGGCGGC GAGCAGCTAC GTCGCAAGAT CGAAAGCATG GGCGTGCGTG TACACACCAG TAAAAACACG CAAGAGATTG TTCAGCAGGG TAACGAAGCA CGTAAGACTA TGCGTTTTGC CGACGGCAGC GAGCTGGAAG TCGATTTCAT CGTCTTCTCT ACCGGTATTC GCCCCCGCGA CAAGCTGGCT ACCCAGTGCG GTCTGGCCGT CGCGCAGCGC GGCGGGATCG TGATTAACGA CACCTGCCAG ACGTCTGACC CAGATATCTA CGCTATCGGC GAGTGCGCCA GTTGGAACAA CCGCGTTTAC GGTCTGGTCG CACCAGGCTA TAAAATGGCC CAGGTCGCCG TTGACCATAT CCTCGGCAGT GAAAACGCCT TTGAAGGGGC GGATCTCAGC GCCAAGCTGA AGCTGCTGGG CGTGGACGTC GGCGGCATCG GCGACGCGCA TGGCCGCACG CCGGGCGCGC GTAGTTACGT TTACCTCGAT GAAAGCAAAG AAGTCTACAA ACGTCTAATT GTCAGCGAAG ATAACAAAAC GCTGCTCGGC GCAGTACTGG TCGGCGACAC CAGCGATTAC GGCAATTTGC TGCAACTGGT ACTGAACGCC ATCGAACTGC CGGAAAACCC GGATTCGCTG ATCCTGCCGT CGCACGCGGG CAGTGGTAAA CCCGCTATCG GCGTGGATAA ACTGCCGGAC AGCGCGCAGA TCTGCTCCTG CTTCGATGTG ACTAAAGGCG ATCTGATCGC CGCTATCAAT AAAGGCTGCC ATACCGTGGC GGCGCTGAAA GCGGAAACCA AAGCCGGAAC CGGCTGCGGC GGCTGCATCC CGCTGGTGAC GCAGGTACTG AACGCCGAAC TGGCGAAACA GGGTATTGAA GTCAACAACA ACCTGTGCGA GCACTTTGCT TATTCTCGTC AGGAACTGTT CCACTTAATC CGCGTGGAAG GTATCAAAAC CTTTGAAGAA CTGCTGGCGA AACACGGTAA AGGCTACGGC TGCGAAGTGT GTAAGCCGAC CGTCGGTTCG CTGCTGGCGT CGTGCTGGAA CGAATACATC CTCAAGCCGC AGCACACGCC GCTACAGGAT ACTAACGATA ACTTCCTGGC GAATATCCAG AAAGACGGTA CTTACTCGGT GATCCCGCGC TCGGCGGGCG GCGAAATCAC CCCGGAAGGT CTGGTGGCCG TGGGGCGTAT CGCCCGCGAG TTTAACCTCT ATACCAAAAT TACCGGTTCT CAGCGTATCG GTCTGTTTGG CGCGCAAAAA GACGATCTGC CGGAAATCTG GCGTCAGTTG ATTGAAGCCG GTTTCGAAAC CGGTCACGCG TACGCCAAAG CGCTGCGGAT GGCGAAAACC TGCGTCGGCA GCACCTGGTG CCGCTACGGC GTGGGCGACA GCGTCGGTTT CGGCGTGGAG CTGGAAAACC GCTACAAAGG CATTCGTACC CCGCACAAAA TGAAATTCGG CGTCTCCGGC TGTACCCGTG AATGTGCGGA AGCGCAGGGC AAAGATGTGG GTATCATCGC CACGGAGAAA GGCTGGAACC TGTACGTCTG CGGTAACGGC GGGATGAAAC CGCGTCATGC GGATCTGCTG GCAGCCGATC TCGATCGCGA CACGCTGATC AAGTACCTCG ACCGCTTTAT GATGTTCTAC ATCCGTACTG CCGACAAACT GACCCGTACC GCGCCGTGGC TGGATAATCT GGAAGGCGGC ATCGAGTACC TGAAATCGGT CATCATCGAC GATAAGCTGG GCCTGAACGA ACATCTGGAA GAAGAGATGG CGCGCCTGCG CGCAGCGGTG GTCTGCGAGT GGACAGAAAC CGTTAACACC CCATCCGCAC AGGTTCGCTT TAAGCACTTT ATCAACAGCG ACAAACGCGA CCCGAACGTC CAGGTTGTGC CTGAACGTGA ACAGCATCGT CCGGCCACGC CGTATGAACG TATCCCGGTC ACTCTGGTGG AGGAAAACGC ATGA
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Protein sequence | MSKVRLAIIG NGMVGHRFIE DLLDKSDASL FDITVFCEEP RKAYDRVHLS SYFSHHTAEE LSLVREGFYE KHGVKVLVGE RAITINRQEK VIHSSAGRTV YYDKLIMATG SYPWIPPIKG SETQDCFVYR TIEDLNAIEA CARRSKRGAV VGGGLLGLEA AGALKNLGVE THVIEFAPML MAEQLDQMGG EQLRRKIESM GVRVHTSKNT QEIVQQGNEA RKTMRFADGS ELEVDFIVFS TGIRPRDKLA TQCGLAVAQR GGIVINDTCQ TSDPDIYAIG ECASWNNRVY GLVAPGYKMA QVAVDHILGS ENAFEGADLS AKLKLLGVDV GGIGDAHGRT PGARSYVYLD ESKEVYKRLI VSEDNKTLLG AVLVGDTSDY GNLLQLVLNA IELPENPDSL ILPSHAGSGK PAIGVDKLPD SAQICSCFDV TKGDLIAAIN KGCHTVAALK AETKAGTGCG GCIPLVTQVL NAELAKQGIE VNNNLCEHFA YSRQELFHLI RVEGIKTFEE LLAKHGKGYG CEVCKPTVGS LLASCWNEYI LKPQHTPLQD TNDNFLANIQ KDGTYSVIPR SAGGEITPEG LVAVGRIARE FNLYTKITGS QRIGLFGAQK DDLPEIWRQL IEAGFETGHA YAKALRMAKT CVGSTWCRYG VGDSVGFGVE LENRYKGIRT PHKMKFGVSG CTRECAEAQG KDVGIIATEK GWNLYVCGNG GMKPRHADLL AADLDRDTLI KYLDRFMMFY IRTADKLTRT APWLDNLEGG IEYLKSVIID DKLGLNEHLE EEMARLRAAV VCEWTETVNT PSAQVRFKHF INSDKRDPNV QVVPEREQHR PATPYERIPV TLVEENA
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