Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A3458 |
Symbol | |
ID | 6875275 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | - |
Start bp | 3319834 |
End bp | 3321969 |
Gene Length | 2136 bp |
Protein Length | 711 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642786452 |
Product | ornithine decarboxylase |
Protein accession | YP_002217090 |
Protein GI | 198244175 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.829522 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 67 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATCAA TGAATATTGC CGCCAGCGGT GAACTCATCC CCTGTCTCTC CACCCACCGA AACGTAGTGG CGCTGGACAG TACCGACTTT ACCGATGTGG CCGCAGTCGT CATTACCACT GCCGACAGCC GTAGCGGTAT TCTGGCGTTG CTTAAACGCA CCGGTTTTCA CCTGCCGGTG TTTATGCTTG CGGATGAACC CGTCAGCGCG CCTGTCGGCG TTACGGCGGT AATCGGCGGG AACGCGCAGG AATGGCTGGA GTTGGAAAAC GCCGCCAGTC GCTACGAAGC GGAACTTCTG CCGCCCTTTT ATGACACCCT GACCCAATAT GTCGACATGG GGAATAGTAC CTTTGCTTGT CCGGGGCACC AGCATGGCGA GTTTTTTAGA AAACATCCCG CAGGCCGCCA TTTTTATGAC TTTTTTGGTG AAAACCTGTT TCGTGCGGAT ATGTGTAACG CCGATGTGAA ACTTGGCGAT CTGCTAATAC ATGAAGGTTC TGCCAAACAC GCGCAGAAAT TTGCGGCAAA AGTGTTTAAT GCGGATAAAA CCTATTTTGT GCTGAATGGA ACTTCGGCGG CGAATAAAGT GGTCACCAAT GCCCTGCTGA CGCGCGGCGA TCTGGTGCTG TTTGATCGTA ATAATCACAA ATCCAACCAC CACGGCGCCC TGATTCAGGC CGGGGCGACG CCGGTCTATC TTGAAGCGGC GCGCAACCCG TTTGGTTTTA TCGGTGGTAT TGATGCGCAC TGTTTTGATG AAACGTACCT GCGCGACCAG ATTCGTGATG TGATGCCGGA AAGCGCCGAT GCATCGCGTC CGTTCCGCCT GGCGATCATT CAACTGGGTA CCTATGACGG CACTATTTAC AACGCCCGTC AGGTGGTGGA TAAAATCGGG CATCTCTGCG ATTACATTCT GTTTGACTCC GCGTGGGTAG GCTATGAGCA GTTTATCAAT ATGATGGCGG ATACCTCGCC GTTGCGGCTG GAGCTTAATG AAAACGACCC TGGGATCTTT GTGACCCAAT CGGTACATAA GCAACAGGCG GGGTTCTCAC AAACCTCGCA GATCCACAAA AAAGATAACC ATATTCGCGG CCAGGCGCGT TTTTGCCCGC ACAAACGCCT GAACAACGCC TTCATGTTGC ACGCCTCGAC CAGTCCGTTC TACCCGCTGT TTGCGGCGCT GGATATCAAT GCCAAAATCC ACGAAGGGGA GAGCGGTCGC CGCCTGTGGG CGGAGTGCGT TGCGCTGGGC ATTGACGCGC GTAAAGCCAT TCTCGCCCGT TGCAAACTGC TTCAGCCCTT TATCCCACTG GTGGTTGACG GCAAGCCGTG GCAGGCATAT CCGACGGAGA CCATTGCCAG CAATCGTCGT TTCTTCAGTT TTGAGCCCGG GGCGAAATGG CATGGCTTTG AGGGTTATGC GGATGACCAG TATTTTGTCG ACCCCTGTAA ACTGTTACTG ACCACGCCAG GTATTGATGC CGATAGCGGG CAGTACACCG AATTCGGCAT CCCGGCGACC ATTCTCGCCC ACTATCTGCG TGAGAACGGT ATTGTGCCTG AGAAATGCGA TCTCAACTCG ATTCTGTTCT TGCTGACACC CGCCGAGAGC GAAGAGAAAC TGGCGCGGCT GGTCGCGATG CTGGCGCAAT TTGAACGGCA CATTGAAGAC GATACGCCGC TTGCGGATGT ATTGCCGACG GTTTTTCAGA AATACCCGGT GCGCTACCGC GATTACACCC TGCGTGAGCT ATGTCAGGAG ATGCACAACC TGTACGTTAG CTTTGACGTT AAGGATCTGC AAAAAGCGAT GTTTCGCAAA GAAAGCCTGC CGCATGTGGC GATGAACCCA CAGGATGCCA ACAGCGCCTT TATTCGCGGC GATGTAGAGC TGGTGCGTAT CAGCGAGGCG GGCGGGCGTA TTGCTGCCGA GGGGGCATTG CCATACCCGC CGGGCGTACT GTGCGTGGTG CCGGGGGAGA TTTGGGGTGG CGCGGCGCAG CGTTATTTTT TGGCGCTGGA AGAGGGCATC AATCTGTTGC CCGGTTTTTC GCCGGAATTG CAGGGGGTAT ATAGCGAGAC CGATGCCGAT GGAATTCAAC GCTTGTACGG ATATGTTTTA AAGTAA
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Protein sequence | MKSMNIAASG ELIPCLSTHR NVVALDSTDF TDVAAVVITT ADSRSGILAL LKRTGFHLPV FMLADEPVSA PVGVTAVIGG NAQEWLELEN AASRYEAELL PPFYDTLTQY VDMGNSTFAC PGHQHGEFFR KHPAGRHFYD FFGENLFRAD MCNADVKLGD LLIHEGSAKH AQKFAAKVFN ADKTYFVLNG TSAANKVVTN ALLTRGDLVL FDRNNHKSNH HGALIQAGAT PVYLEAARNP FGFIGGIDAH CFDETYLRDQ IRDVMPESAD ASRPFRLAII QLGTYDGTIY NARQVVDKIG HLCDYILFDS AWVGYEQFIN MMADTSPLRL ELNENDPGIF VTQSVHKQQA GFSQTSQIHK KDNHIRGQAR FCPHKRLNNA FMLHASTSPF YPLFAALDIN AKIHEGESGR RLWAECVALG IDARKAILAR CKLLQPFIPL VVDGKPWQAY PTETIASNRR FFSFEPGAKW HGFEGYADDQ YFVDPCKLLL TTPGIDADSG QYTEFGIPAT ILAHYLRENG IVPEKCDLNS ILFLLTPAES EEKLARLVAM LAQFERHIED DTPLADVLPT VFQKYPVRYR DYTLRELCQE MHNLYVSFDV KDLQKAMFRK ESLPHVAMNP QDANSAFIRG DVELVRISEA GGRIAAEGAL PYPPGVLCVV PGEIWGGAAQ RYFLALEEGI NLLPGFSPEL QGVYSETDAD GIQRLYGYVL K
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