Gene SeD_A3278 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3278 
Symbol 
ID6874198 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp3154269 
End bp3157025 
Gene Length2757 bp 
Protein Length918 aa 
Translation table11 
GC content53% 
IMG OID642786291 
Producthybrid sensory histidine kinase BarA 
Protein accessionYP_002216932 
Protein GI198245109 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG4999] Uncharacterized domain of BarA-like signal transduction histidine kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones54 
Fosmid unclonability p-value0.225719 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCAACT ACAGCCTGCG CGCACGCATG ATGATTCTGA TCCTGGCCCC GACCGTCCTG 
ATAGGTTTGC TGCTCAGTAT CTTTTTTGTA GTGCACCGCT ATAACGACCT GCAGCGTCAA
CTGGAAGATG CCGGCGCCAG TATTATTGAA CCGCTCGCCG TCTCCAGCGA ATATGGTATG
AACTTACAAA ACCGAGAGTC TATCGGCCAA CTTATCAGCG TCCTGCACCG CAGACACTCT
GATATTGTGC GGGCAATTTC CGTTTATGAC GATCATAACC GCCTGTTTGT AACGTCTAAT
TTCCATCTGG ACCCCTCACA GATGCAGCTT CCCGCCGGAG CGCCGTTTCC ACGTCGTCTG
AGCGTCGATC GCCACGGCGA TATTATGATT CTGCGCACCC CGATTATCTC GGAGAGCTAT
TCGCCGGACG AGTCAGCGAT TGCCGACGCA AAAAATACCA AAAATATGCT GGGGTATGTG
GCGCTTGAAC TGGATCTCAA GTCGGTCAGG CTACAGCAAT ACAAAGAGAT TTTTATCTCC
AGCGTGATGA TGCTTTTTTG TATTGGCATT GCGCTGATCT TTGGCTGGCG GCTTATGCGC
GATGTCACCG GGCCTATCCG TAATATGGTG AATACCGTTG ACCGCATTCG CCGCGGACAA
CTGGATAGCC GGGTGGAAGG ATTTATGCTG GGCGAGCTGG ACATGCTGAA AAACGGCATT
AATTCCATGG CGATGTCGCT TGCCGCCTAT CACGAAGAGA TGCAGCATAA TATCGATCAG
GCCACCTCGG ACCTGCGTGA AACCCTTGAG CAGATGGAAA TCCAAAACGT TGAGCTGGAT
CTGGCGAAAA AGCGCGCCCA GGAAGCGGCG CGTATTAAGT CGGAGTTCCT GGCAAACATG
TCGCACGAAC TGCGAACGCC GCTGAACGGC GTCATTGGCT TTACCCGCCT GACATTAAAA
ACGGAGCTGA ACCCCACCCA GCGCGACCAT CTGAACACCA TTGAGCGTTC CGCGAATAAT
CTGCTGGCGA TCATTAATGA CGTGCTTGAT TTCTCCAAGC TGGAAGCCGG TAAGCTCATT
CTGGAAAGTA TCCCTTTTCC ACTGCGCAAC ACGCTGGATG AAGTGGTTAC GCTGCTGGCT
CACTCGTCGC ATGATAAAGG GCTGGAGTTG ACGTTAAATA TTAAAAACGA CGTCCCGGAT
AATGTGATTG GCGACCCGCT GCGCCTGCAA CAGGTCATTA CTAATCTGGT GGGCAATGCC
ATTAAGTTCA CCGAGAGTGG CAATATCGAT ATTCTGGTAG AAAAGCGGGC GCTCAGTAAC
ACCAAAGTAC AGATTGAAGT GCAGATCCGC GATACGGGGA TCGGCATTCC GGAACGCGAC
CAGTCTCGAC TGTTTCAGGC GTTTCGCCAG GCCGATGCCA GTATTTCTCG CCGTCACGGC
GGCACCGGGC TTGGGCTGGT GATTACGCAA AAGCTGGTCA ACGAAATGGG CGGGGATATC
TCTTTCCACA GCCAGCCTAA TCGCGGCTCG ACCTTCTGGT TTCATATTCA TCTTGATCTT
AACCCAAATG TCATTATTGA CGGGCCGTCG ACCGCGTGTC TGGCCGGGAA ACGACTGGCT
TATATCGAAC CGAATGCTAC CGCCGCGCAA TGTACCCTGG ATCTGCTGAG CGACACGCCG
GTGGAAGTGG TTTACAGCCC GACCTTCTCC GCGCTGCCGT TAGCGCACTA CGATATTATG
ATTTTGAGCG TTCCGGTGAC CTTCCGCGAG CCGCTCACCA TGCAGCATGA ACGTCTGGCG
AAAGCAGCGT CAATGACGGA CTTTCTACTG CTGGCGCTAC CTTGCCATGC GCAAATTAAC
GCCGAAAAGC TGAAACAAGG AGGCGCGGCG GCCTGTCTGT TAAAACCATT GACGTCAACG
CGCCTGTTGC CAGCGCTGAC GGAATATTGC CAGTTGAATC ACCATCCTGA ACCGCTGCTA
ATGGATACCA GTAAAATCAC CATGACGGTT ATGGCGGTTG ATGATAATCC CGCTAATCTG
AAGCTTATCG GCGCGTTACT GGAAGATAAA GTCCAGCACG TAGAACTTTG TGATAGCGGA
CATCAGGCGG TGGATCGGGC GAAACAAATG CAGTTTGATC TGATTTTGAT GGATATTCAG
ATGCCGGATA TGGACGGCAT ACGCGCCTGC GAATTGATTC ACCAGCTTCC TCATCAGCAG
CAAACACCGG TTATTGCCGT TACGGCACAT GCGATGGCCG GGCAAAAAGA GAAATTGCTC
AGCGCGGGCA TGAACGACTA TCTGGCTAAA CCGATAGAAG AAGAGAAGTT GCATAATCTG
TTGCTGCGCT ATAAACCTGG CGCCAACGTA GCAGCGCGCC TGATGGCGCC GGAACCGGCT
GAGTTTATCT TCAATCCGAA TGCAACGCTC GACTGGCAGC TTGCGCTCCG CCAGGCTGCC
GGTAAGCCCG ATCTGGCACG GGATATGCTG CAAATGCTGA TTGATTTTCT GCCGGAAGTG
CGCAACAAAA TTGAAGAACA ACTGGTGGGA GAAAATCCCA ACGGTTTGGT CGATCTGGTC
CATAAGCTAC ACGGGAGCTG CGGCTATAGC GGCGTACCGC GGATGAAGAA CCTTTGCCAG
CTTATTGAGC AACAGCTTCG CAGCGGCGTC CACGAAGAGG AGCTGGAGCC TGAGTTTCTG
GAGCTGCTGG ATGAGATGGA TAATGTCGCG CGTGAAGCGA AGAAGATATT AGGCTGA
 
Protein sequence
MTNYSLRARM MILILAPTVL IGLLLSIFFV VHRYNDLQRQ LEDAGASIIE PLAVSSEYGM 
NLQNRESIGQ LISVLHRRHS DIVRAISVYD DHNRLFVTSN FHLDPSQMQL PAGAPFPRRL
SVDRHGDIMI LRTPIISESY SPDESAIADA KNTKNMLGYV ALELDLKSVR LQQYKEIFIS
SVMMLFCIGI ALIFGWRLMR DVTGPIRNMV NTVDRIRRGQ LDSRVEGFML GELDMLKNGI
NSMAMSLAAY HEEMQHNIDQ ATSDLRETLE QMEIQNVELD LAKKRAQEAA RIKSEFLANM
SHELRTPLNG VIGFTRLTLK TELNPTQRDH LNTIERSANN LLAIINDVLD FSKLEAGKLI
LESIPFPLRN TLDEVVTLLA HSSHDKGLEL TLNIKNDVPD NVIGDPLRLQ QVITNLVGNA
IKFTESGNID ILVEKRALSN TKVQIEVQIR DTGIGIPERD QSRLFQAFRQ ADASISRRHG
GTGLGLVITQ KLVNEMGGDI SFHSQPNRGS TFWFHIHLDL NPNVIIDGPS TACLAGKRLA
YIEPNATAAQ CTLDLLSDTP VEVVYSPTFS ALPLAHYDIM ILSVPVTFRE PLTMQHERLA
KAASMTDFLL LALPCHAQIN AEKLKQGGAA ACLLKPLTST RLLPALTEYC QLNHHPEPLL
MDTSKITMTV MAVDDNPANL KLIGALLEDK VQHVELCDSG HQAVDRAKQM QFDLILMDIQ
MPDMDGIRAC ELIHQLPHQQ QTPVIAVTAH AMAGQKEKLL SAGMNDYLAK PIEEEKLHNL
LLRYKPGANV AARLMAPEPA EFIFNPNATL DWQLALRQAA GKPDLARDML QMLIDFLPEV
RNKIEEQLVG ENPNGLVDLV HKLHGSCGYS GVPRMKNLCQ LIEQQLRSGV HEEELEPEFL
ELLDEMDNVA REAKKILG