Gene SeD_A3221 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3221 
Symbol 
ID6872928 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp3099087 
End bp3099998 
Gene Length912 bp 
Protein Length303 aa 
Translation table11 
GC content55% 
IMG OID642786238 
ProductLysR family transcriptional regulator 
Protein accessionYP_002216879 
Protein GI198244448 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.078712 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones75 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCAATT TGCAGCGTAT GTCGCTGTTT ATCGCCGTGG TAGATAGCGG CAGCTTCACG 
GCCGCCGCCG CCGCATCGGG CCAAACAAAA GCGGTAGTGA GTTTTAATAT TCGGCAGCTT 
GAAAAAGAGC TTGGCGTAAC GTTATTGCTA CGTTCCACCC GACGACTGAC GCTCACAGAC 
GCCGGCGTCC TCTTTTACCA AAAAGGCGTG AATTTACTCA ACGCAGCGAA AAATTTGCAG 
GATGAAGTGC GTGCCAGCCA TAGTGGGCTG GGCGGCGAGT TACGTATTAC CACTACGCCC 
GAGTTTGGCG AACAGGTGGT CATTCCGGTA CTGGCGCAGT TTAGTCAGCG CCATCCCGAT 
CTCCGTATTC GGCATATGTC CTCATCACAT CATGCCGATT TAATTGCCGA GCGCTTTGAT 
GTGGCGATTC GGCTTGGCTC GCTGGCCGAC TCCCGCTATC GCGCCGCGCT GATATCCCGC 
TTTACCATTC TGCCGGTCGC CGCGCCGCAG TGGCTCGCCC GCCACCCCGT GTCGTCGCTG 
GAGTCGTTGG CTCAGGCGGA ATGGATTATT CATAAGCGAT TACCTACGCC GCTACGGTGG 
ACAGTAACGA ATAATCATGG CCAACACTCA CGCCTGGAGA TAAGCAAAGC CGGCAAAATT 
TCTGTCGACA GCGCGCGCTC GCTGATGGCC TTCGCTCTCG CAGGAAGCGG CGTCGCATTA 
CTGCCGCAAT GGTTAGTCAA CACCGCACTG GAGGAGGGAA CGTTAATTCA CCTGTTACCC 
GACTATCATT TTCCCCGTCA GGGCATTTAT GCCGTTTACC CGGACGCCCG CCATGTATCG 
ACAAAAGTAC GCGCATTTAT TGATTTTTTA CGTTCGCAAT GGGATTGCGG GGAGCACGCC 
CAATCATTGT AG
 
Protein sequence
MLNLQRMSLF IAVVDSGSFT AAAAASGQTK AVVSFNIRQL EKELGVTLLL RSTRRLTLTD 
AGVLFYQKGV NLLNAAKNLQ DEVRASHSGL GGELRITTTP EFGEQVVIPV LAQFSQRHPD 
LRIRHMSSSH HADLIAERFD VAIRLGSLAD SRYRAALISR FTILPVAAPQ WLARHPVSSL 
ESLAQAEWII HKRLPTPLRW TVTNNHGQHS RLEISKAGKI SVDSARSLMA FALAGSGVAL 
LPQWLVNTAL EEGTLIHLLP DYHFPRQGIY AVYPDARHVS TKVRAFIDFL RSQWDCGEHA 
QSL