| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A3115 |
|---|
| Symbol | proV |
|---|
| ID | 6870960 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 3000612 |
|---|
| End bp | 3001814 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 642786139 |
|---|
| Product | glycine betaine transporter ATP-binding subunit |
|---|
| Protein accession | YP_002216785 |
|---|
| Protein GI | 198245385 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4175] ABC-type proline/glycine betaine transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01186] glycine betaine/L-proline transport ATP binding subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 0.405398 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATTA AATTAGAAGT GAAGAATCTG TATAAAATAT TTGGAGAGCA TCCGCAGCGT
GCCTTCAAAT ATATTGAAAA GGGACTATCG AAAGAGCAAA TACTGGAAAA AACGGGGCTA
TCGCTTGGCG TTAAAGACGC CAGTCTGGCC ATTGAAGAAG GCGAGATATT TGTCATCATG
GGATTATCCG GCTCGGGTAA ATCCACAATG GTACGCCTTC TCAATCGCCT GATTGAACCC
ACCCGCGGAC AGGTACTGAT TGACGGCGTT GATATTGCCA AAATATCAGA CGCTGAGCTT
CGCGAGGTGC GCAGGAAAAA GATTGCGATG GTCTTCCAGT CATTTGCGCT CATGCCGCAT
ATGACCGTGC TGGATAATAC GGCATTCGGT ATGGAATTAG CGGGCATCGC GGCGCAAGAG
CGTCGCGAAA AAGCGCTGGA CGCCTTGCGT CAGGTGGGGC TTGAAAATTA CGCTCATGCC
TATCCGGATG AACTTTCCGG TGGGATGCGT CAGCGTGTTG GACTTGCCCG CGCGCTGGCA
ATCAACCCTG ATATCTTATT AATGGACGAA GCGTTTTCCG CCCTCGATCC ATTAATTCGT
ACCGAAATGC AGGATGAACT GGTGAAATTA CAGGCGAAAC ATCAGCGCAC CATTGTCTTT
ATTTCCCACG ATCTTGATGA GGCTATGCGT ATTGGCGACA GGATTGCCAT TATGCAAAAT
GGCGAGGTCG TACAGGTTGG TACGCCGGAT GAGATCCTGA ATAATCCGGC AAATGATTAT
GTCCGCACGT TCTTCCGTGG CGTGGATATT AGTCAGGTCT TTAGCGCCAA AGATATTGCC
CGTCGCAGTC CGGTCGGCTT AATTCGTAAA ACGCCAGGTT TCGGTCCCCG TTCGGCACTG
AAATTATTAC AGGACGAAGA CCGTGAATAT GGTTACGTCA TTGAGCGTGG CAATAAATTC
GTGGGCGTCG TGTCCATCGA CTCATTAAAA GCGGCATTAA GCCAGGCGCA AGGGATTGAA
GCGGCGCTTA TCGACGACCC TTTAGTTGTT GATGCGCAAA CCCCACTCAG CGAGTTGCTC
TCTCACGTCG GCCAGGCGCC CTGCGCGGTG CCGGTTGTCG ATGAAGAACA CCAGTATGTT
GGCATTATTT CAAAACGTAT GTTGCTACAG GCTTTAGATC GCGAGGGGGG TAACAATGGC
TGA
|
|---|
| Protein sequence | MAIKLEVKNL YKIFGEHPQR AFKYIEKGLS KEQILEKTGL SLGVKDASLA IEEGEIFVIM
GLSGSGKSTM VRLLNRLIEP TRGQVLIDGV DIAKISDAEL REVRRKKIAM VFQSFALMPH
MTVLDNTAFG MELAGIAAQE RREKALDALR QVGLENYAHA YPDELSGGMR QRVGLARALA
INPDILLMDE AFSALDPLIR TEMQDELVKL QAKHQRTIVF ISHDLDEAMR IGDRIAIMQN
GEVVQVGTPD EILNNPANDY VRTFFRGVDI SQVFSAKDIA RRSPVGLIRK TPGFGPRSAL
KLLQDEDREY GYVIERGNKF VGVVSIDSLK AALSQAQGIE AALIDDPLVV DAQTPLSELL
SHVGQAPCAV PVVDEEHQYV GIISKRMLLQ ALDREGGNNG
|
|---|
| |