Gene SeD_A2933 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A2933 
Symbol 
ID6873648 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp2824172 
End bp2825716 
Gene Length1545 bp 
Protein Length514 aa 
Translation table11 
GC content48% 
IMG OID642785974 
ProductDNA-binding transcriptional activator CadC 
Protein accessionYP_002216624 
Protein GI198244732 
COG category[K] Transcription 
COG ID[COG3710] DNA-binding winged-HTH domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones1 
Plasmid unclonability p-value0.00185207 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones87 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCAAC CTGTTGTACG CATTGGAGAG TGGCTGGTTA CACCTTCTGT TAATCAGATC 
AGTCGTCAGG GACGCCAGAT TACTCTTGAA CCACGGCTGA TCGATCTTCT GATGTATTTT 
GCGCATCATC CGGATGAAGT GTTAAGCCGG GATAACATTA TTGATCATGT CTGGATGCGC 
ACCATCGTGA CCAACCATGT TGTCACCCAA AGCATTTCTG AACTACGCAA ATCATTAAGA 
GATGGCGGAG ACAGCAATGC TGAATACATC GTTACCGTAC CTAAACGCGG CTATAAGCTG 
ACGGCGCCGG TTATCTGGTG CGAAGAAAAT AGCGATGAGA TCGATAATTC ATCAACGTCG 
CCGCCGCCGC CGATCGCAGC AACGAATGCA GAACCGACAG AGGGGGCTAC TGCCGCTACG 
CCTGTGCCGC CCGCTTCTTT GCAAACGCCG ACTAAAAAGG CGAAAAAGCC GCGTATCGCC 
GCTTTCTGGA CGTGGGTGAT GTTCCTGCTC TCGCTGGCGA CGCTGGTGGT GTTTATCGTG 
ATGTCGGTGG TAGATCATAA TGCCGCGGTA ACAAAAACGC GGTTATTACT TAACCCACGA 
GATATAGATG TTCGTTTTGA AGGCGGCAAT TCCTGTAATA ACTGGGTCTC GCAGGAGTCC 
TACGCCATCG GTCTGGGCGG CTTAATCACC GACCTGCTGA ACACCTACTC GACTTTTATG 
GTGCACGATA AAACCAATTA CCGGGTCAAT GAGCCAAGCA GCTCCGGTAA GACGTTAACC 
ATTCAGTTTG TCAATCAGCG CCACTATCGG GCGCAGCAGT GCTTTATGTC TGTAGTGCTC 
ATTGATAACG CCGATGGTTC AACCATGCTG GATAAGCGTT ATTTCGTCAC CAATACTAAC 
CAGTTGTCCA TCCAGGATGA TCTGTTTAAT AGCCTGTCTT TCGTTTTAAC ACAGCCCTGG 
CCTAATCGTA TGCGAGAACA ACTGGCCCTG TTCAGAACGC CGCAAAATAC CGCGCTGATG 
CGTTTTTATG AGGCGCGCCA GCTTATTCTG AGCGGCGATG CGCAGGCGCT AGGTAAAGCC 
AGCGATATTC TGAATGGCAT TATTAAGGAA ACGCCTGATT TCAACTATGC CTATGAATAT 
AAAGTGCTGG TAGATGTATT ACGGCAATCA CAGCAGCCGT TTGATAAAGA ACAAGTGGCC 
GCACTGAACG AAGAGTTTAA AAAAATAGAT CAAATTCCGG GCGTTGAGAA AACGTCTGTT 
TATTATAAAA TCAAGACCGT CGATCTGTTA GGCAAAGGTG ATATCGATGC AGCGTATGAG 
GAAATCAATA AAAGCATCGA GCTTGAAATG TCGTGGTTTA ACTATGTCCT GTTGGGGAAA 
GTTTACGAAA TGAAAGGTGA GAATCGTCTG GCCGCTGATG CCTATCTGAC CGCCTTTAAT 
TTACGTCCAG GTGAAAACAC TCTGTACTGG ATCGAGAACG GCGTATTTCA GACATCCGTT 
CAGAAAATTG TCCCTTATCT GAATAGTTTT CTGGCAGAAG ATTAA
 
Protein sequence
MQQPVVRIGE WLVTPSVNQI SRQGRQITLE PRLIDLLMYF AHHPDEVLSR DNIIDHVWMR 
TIVTNHVVTQ SISELRKSLR DGGDSNAEYI VTVPKRGYKL TAPVIWCEEN SDEIDNSSTS 
PPPPIAATNA EPTEGATAAT PVPPASLQTP TKKAKKPRIA AFWTWVMFLL SLATLVVFIV 
MSVVDHNAAV TKTRLLLNPR DIDVRFEGGN SCNNWVSQES YAIGLGGLIT DLLNTYSTFM 
VHDKTNYRVN EPSSSGKTLT IQFVNQRHYR AQQCFMSVVL IDNADGSTML DKRYFVTNTN 
QLSIQDDLFN SLSFVLTQPW PNRMREQLAL FRTPQNTALM RFYEARQLIL SGDAQALGKA 
SDILNGIIKE TPDFNYAYEY KVLVDVLRQS QQPFDKEQVA ALNEEFKKID QIPGVEKTSV 
YYKIKTVDLL GKGDIDAAYE EINKSIELEM SWFNYVLLGK VYEMKGENRL AADAYLTAFN 
LRPGENTLYW IENGVFQTSV QKIVPYLNSF LAED