Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeD_A2849 |
Symbol | dapE |
ID | 6871458 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
Kingdom | Bacteria |
Replicon accession | NC_011205 |
Strand | + |
Start bp | 2723226 |
End bp | 2724353 |
Gene Length | 1128 bp |
Protein Length | 375 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642785900 |
Product | succinyl-diaminopimelate desuccinylase |
Protein accession | YP_002216550 |
Protein GI | 198245701 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 79 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGTGCC CGGTTATTGA GCTGACACAG CAACTTATTC GTCGCCCCTC CCTGAGTCCG GATGACGCAG GCTGTCAGGC ATTAATGATT GAACGCCTTC GTAAAATCGG TTTTACCATT GAGCATATGG ATTTTGGCGA CACGCAAAAT TTTTGGGCAT GGCGTGGGCG TGGCGAAACG CTGGCGTTCG CCGGGCATAC TGACGTCGTA CCGGCTGGCG ATGTCGATCG CTGGATCAAT CCGCCGTTTG AGCCTACGAT TCGCGACGGA ATGTTGTTCG GTCGCGGCGC GGCGGATATG AAAGGTTCAC TGGCGGCCAT GGTGGTGGCT GCTGAACGTT TTGTTGCGCA GCATCCTCAT CACCGGGGCC GCCTCGCATT TTTGATTACC TCTGATGAGG AAGCCAGCGC AAAAAATGGC ACCGTAAAGG TGGTTGAAGC GCTGATGGCC CGTAACGAGC GGCTGGATTA CTGTCTGGTC GGCGAACCTT CCAGTACTGA AATTGTGGGC GATGTCGTCA AAAACGGGCG TCGCGGTTCT CTCACCTGTA ACCTCACTAT CCATGGCGTT CAGGGGCACG TTGCCTATCC GCATCTGGCG GATAACCCTG TTCATCGCGC CGCGCCTTTT CTTAATGAAC TGGTCGCTAT CGAGTGGGAT CGGGGCAATG ACTTTTTCCC GGCCACCAGT ATGCAGGTAG CCAATATCCA GGCAGGCACC GGCAGCAATA ATGTCATTCC CGGCGAACTG TTCGTGCAGT TTAACTTCCG TTTCAGCACG GAACTGACCG ATGAGATGAT CAAAGAGCGG GTACATGCGC TGCTTGAAAA GCATCAGCTA CGCTATACCG TAGACTGGTG GCTTTCCGGC CAGCCGTTCC TGACCGCACG CGGCAAGCTG GTGGACGCGG TGGTAAATGC CATTGAGCAC TATAATGAAA TTAAACCGCA ATTACTGACG ACGGGCGGTA CGTCCGACGG ACGTTTTATC GCCCGTATGG GAGCGCAGGT GGTAGAACTG GGGCCGGTGA ACGCCACCAT TCATAAAATT AATGAATGTG TGAATGCCGC CGATCTCCAG CTACTGGCCC GTATGTATCA ACGCATTATG GAACAGCTCG TCGCCTGA
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Protein sequence | MSCPVIELTQ QLIRRPSLSP DDAGCQALMI ERLRKIGFTI EHMDFGDTQN FWAWRGRGET LAFAGHTDVV PAGDVDRWIN PPFEPTIRDG MLFGRGAADM KGSLAAMVVA AERFVAQHPH HRGRLAFLIT SDEEASAKNG TVKVVEALMA RNERLDYCLV GEPSSTEIVG DVVKNGRRGS LTCNLTIHGV QGHVAYPHLA DNPVHRAAPF LNELVAIEWD RGNDFFPATS MQVANIQAGT GSNNVIPGEL FVQFNFRFST ELTDEMIKER VHALLEKHQL RYTVDWWLSG QPFLTARGKL VDAVVNAIEH YNEIKPQLLT TGGTSDGRFI ARMGAQVVEL GPVNATIHKI NECVNAADLQ LLARMYQRIM EQLVA
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