| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A2712 |
|---|
| Symbol | |
|---|
| ID | 6871546 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 2594036 |
|---|
| End bp | 2595463 |
|---|
| Gene Length | 1428 bp |
|---|
| Protein Length | 475 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642785777 |
|---|
| Product | putative regulatory protein |
|---|
| Protein accession | YP_002216434 |
|---|
| Protein GI | 198241821 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.349156 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 71 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATCCA CCAATCAGGA ACTGGCCTCG GCGCTCAGGA TGTTTTCCCG CTTTTTCGAT
TTGATTCATC AGCCGTTGGC CGTCATTAAT GAGCGTGGTG AATACGTTTA CTACAATCAG
GAAAGCGCGG ATCTGGACGG CTACAGCATT GAACGGGCAA TGGGAAAACA TATGCTGGAT
GTCTATCCGG GCATGAAAGA GACGCAAAGT ACGATGCTTT CATCGTTAAA AAAAGGCGTG
GAATACATTG GCCATTATCA AATTTATTAC AATGCGCGAG GCCAGGCCGT TGACTATCAG
CACACCACCG CACCGCTCTA TGCAAGCGAT GGCGGCATGG TCGGCGTTAT CGAAATCGGC
AGGAATATGT CCGGCGTCAG GCGGCTCCAG GAGCAGGTGG TAGAACTGAA CCAACTGCTG
TATGCCGATC GCCATGAGAA GCACCATGCC ATTATTACCG AAAACCCGGA AATGCTCAGT
AATATCGCCA AAGCCAAACG GCTGGCCGCC AGTAATATTC CGGTGACGAT TGTCGGGGAG
ACGGGTACGG GTAAGGAGCT ATTTTCCCGC CTGATACATC AATGCAGCAA GCGGGCGAAT
AAGCCATTTA TCGCCCTGAA CTGCGGCGCT CTACCGCCTA CGCTTATCGA AAGTACGCTT
TTCGGCACCG TGCGCGGCGC CTATACCGGC GCGGAAAATA GCCAGGGCTA TCTGGAACTG
GCAAACGGGG GAACGCTCTT TCTTGATGAG CTGAACGCCA TGCCGATAGA AATGCAAAGT
AAGCTGCTGC GATTCTTGCA GGATAAAACC TTCTGGCGGC TCGGCGGACA ACAGCAACTC
CACTCTGATG TCAGGATCGT TGCCGCCATG AACGAAGCGC CCGTCAAATT AATTCAACAA
GAACGCCTGC GGGCGGATCT TTTTTATCGG TTGAGCGTCG GAATGTTAAC GTTACCGCCG
CTGCGCGCCC GCCCGGAAGA TATTCCCTTA CTGGCAAATT ATTTTATTGA TAAATACCGT
AATGATGTGC CGCAGGACAT TCACGGACTA AGCGAGACGG CGCGTGCTGA TCTGCTCAAT
CACGCCTGGC CGGGTAATGT CAGGATGCTG GAAAACGCGA TTGTACGCAG CATGATCATG
CAGGAAAAAG ACGGGCTGCT GAAACACATC ATTTTTGAAC AGGACGAGTT AAATTTAGGC
GTACCGGAAA CCGCGCCGGA AAATCCCCTT CCCTCGTCAC CCGATCCGCA GTATGAAGGG
TCGCTGGAGG TACGGGTTGC TAACTACGAA AGGCATTTAA TAGAAACCGC GCTGGATACG
CATCAGGGGA ATATTGCCGC CGCGGCCCGC AGCCTTAACG TATCGCGCAC CACGTTACAG
TACAAAGTAC AAAAATACGC TATTCGCTTC GGCGTGGTGC GTAATTGA
|
|---|
| Protein sequence | MASTNQELAS ALRMFSRFFD LIHQPLAVIN ERGEYVYYNQ ESADLDGYSI ERAMGKHMLD
VYPGMKETQS TMLSSLKKGV EYIGHYQIYY NARGQAVDYQ HTTAPLYASD GGMVGVIEIG
RNMSGVRRLQ EQVVELNQLL YADRHEKHHA IITENPEMLS NIAKAKRLAA SNIPVTIVGE
TGTGKELFSR LIHQCSKRAN KPFIALNCGA LPPTLIESTL FGTVRGAYTG AENSQGYLEL
ANGGTLFLDE LNAMPIEMQS KLLRFLQDKT FWRLGGQQQL HSDVRIVAAM NEAPVKLIQQ
ERLRADLFYR LSVGMLTLPP LRARPEDIPL LANYFIDKYR NDVPQDIHGL SETARADLLN
HAWPGNVRML ENAIVRSMIM QEKDGLLKHI IFEQDELNLG VPETAPENPL PSSPDPQYEG
SLEVRVANYE RHLIETALDT HQGNIAAAAR SLNVSRTTLQ YKVQKYAIRF GVVRN
|
|---|
| |