| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A2559 |
|---|
| Symbol | |
|---|
| ID | 6872882 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 2438249 |
|---|
| End bp | 2439430 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642785634 |
|---|
| Product | sugar efflux transporter B |
|---|
| Protein accession | YP_002216292 |
|---|
| Protein GI | 198242958 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00899] sugar efflux transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0168132 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.000108533 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCACAACA GTCCCGCCGC CGCTGCGCCT AAATCGTTTG ACCTGACGTC TACCGCCTTT
TTGATCGTCG CTTTTCTCAC CGGTATTGCC GGTGCGCTAC AGACGCCGAC GCTCAGTATT
TTTCTGACGG ATGAGGTTCA CGCCCGCCCC GGCATGGTGG GATTCTTTTT TACCGGCAGC
GCGGTTATCG GCATTATCGT GAGCCAGTTT CTGGCCGGTC GCTCAGATAA AAAAGGCGAT
CGCAAAAAAC TGATCGTTTT CTGTTGCGTG CTGGGCATGT TGGCCTGCGT GCTGTTTGCC
TGGAACCGCA ACTACTTTAT TTTGCTGTTT ATCGGCGTCT TTCTCAGTAG CTTCGGCTCT
ACCGCCAACC CGCAGATGTT TGCGCTCGCC CGTGAACATG CCGATCGTAC AGGTCGTGAA
GCGGTGATGT TCAGCTCAAT CCTCCGCGCC CAGGTCTCAT TGGCCTGGGT CATTGGGCCG
CCGCTGGCCT ATGCGCTGGC GATGGGTTTT AGCTTTACGG TGATGTATTT GAGCGCGGCG
GTAGCTTTTA TCGTCTGCGG CGTCATGGTG TGGTTCTTTT TACCGTCAAT GCGCAAAGAT
GCGCCGCTGG CAACCGGCAC GCTGGAAGCA CCGCGTCGTA ATCGCCGCGA TACGCTGTTG
CTGTTTGTCA TCTGTACGTT AATGTGGGGA ACTAACAGCC TGTATATCAT TAATATGCCG
CTGTTTATCA TCAATGAGCT GCATCTTCCG GAAAAACTTG CAGGCGTGAT GATGGGCACC
GCCGCCGGGC TGGAGATTCC CACAATGCTG ATTGCAGGTT ACTTCGCCAA ACGGTTGGGA
AAACGCCTGT TAATGTGCAT CGCCGTTGTC GCCGGACTGT GCTTTTATGC GGGGATGTTG
CTGGCGCACG CGCCGGCAAC GTTACTCGGC TTGCAGTTGC TGAACGCGAT TTACATCGGC
ATTCTTGGCG GGATTGGCAT GCTCTATTTT CAGGATCTCA TGCCAGGCCA GGCGGGTTCA
GCCACCACGC TGTATACCAA TACCATTCGC GTCGGCTGGA TCATTGCCGG TTCGCTGGCG
GGAATCGCCG CAGAAATCTG GAATTATCAT GCGGTCTTCT GGTTTGCGTT AGTCATGATT
GTCGCCACCA TGTTCTGCCT GGCGCGTATT AAAGATGTTT AA
|
|---|
| Protein sequence | MHNSPAAAAP KSFDLTSTAF LIVAFLTGIA GALQTPTLSI FLTDEVHARP GMVGFFFTGS
AVIGIIVSQF LAGRSDKKGD RKKLIVFCCV LGMLACVLFA WNRNYFILLF IGVFLSSFGS
TANPQMFALA REHADRTGRE AVMFSSILRA QVSLAWVIGP PLAYALAMGF SFTVMYLSAA
VAFIVCGVMV WFFLPSMRKD APLATGTLEA PRRNRRDTLL LFVICTLMWG TNSLYIINMP
LFIINELHLP EKLAGVMMGT AAGLEIPTML IAGYFAKRLG KRLLMCIAVV AGLCFYAGML
LAHAPATLLG LQLLNAIYIG ILGGIGMLYF QDLMPGQAGS ATTLYTNTIR VGWIIAGSLA
GIAAEIWNYH AVFWFALVMI VATMFCLARI KDV
|
|---|
| |