Gene SeD_A2550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A2550 
Symbol 
ID6875400 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand- 
Start bp2431073 
End bp2431936 
Gene Length864 bp 
Protein Length287 aa 
Translation table11 
GC content55% 
IMG OID642785625 
Productputative DNA-binding transcriptional regulator 
Protein accessionYP_002216283 
Protein GI198246110 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones42 
Fosmid unclonability p-value0.00111574 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCATATTA CGCTACGACA ACTTGAAGTG TTTGCTGAAG TACTGAAAAG CGGTTCAACA 
ACCCAGGCGT CGGTCATGCT GTCATTATCG CAGTCCGCCG TTAGCGCCGC GCTCACCGAT 
CTGGAAGGTC AGCTCGGCGT ACAGTTGTTT GATCGGGTGG GGAAACGGCT GGTGGTCAAC 
GAACATGGGC GCTTGTTATA CCCGCGCGCG CTGGCATTGC TGGAGCAAGC GGTAGAAATT 
GAGCAGCTAT TTCGTGAAGA TAACGGCGCG ATACGGGTTT ATGCCAGTAG CACCATCGGC 
AATTACATTT TACCCGCCAT GATTGCCCGC TATCGCCAGC ATTATCCGGC CTTGCCGCTG 
GAACTCAGCG TGGGAAACAG CCAGGACGTG ATTAACGCGG TGTTGGATTT TCGGGTTGAT 
ATCGGCCTGA TTGAAGGGCC GTGTCACAGT ACAGAGATTA TCTCTGAGCC GTGGCTGGAA 
GATGAGCTGG TGGTCTTTGC CGCGCCGTCC TCGCCGCTGA CGCAGGGGCC GGTGACGCTG 
GAACAGCTTG CGGCATCCCC ATGGATTTTA CGCGAGCGCG GTTCCGGTAC GCGGGAAATT 
GTCGATTATT TGCTGTTGTC GCATTTACCG CGCTTTCATA TGGCGATGGA GTTGGGGAAT 
TCAGAAGCGA TCAAACATGC GGTGCGTCAT GGACTGGGGA TAAGCTGTTT ATCGCGCCGG 
GTGATTGCTG AACAACTCCA GGCGGGAACC CTGGGCGAAG TCGCGGTGCC GTTACCGCGC 
CTGGTGCGCA CGTTGTGGCG TGTTCATCAT CGGCAGAAAC ATCTTTCTAA CGCGTTGCAG 
CGTTTTTTGA GTTACTGTGA ATAA
 
Protein sequence
MHITLRQLEV FAEVLKSGST TQASVMLSLS QSAVSAALTD LEGQLGVQLF DRVGKRLVVN 
EHGRLLYPRA LALLEQAVEI EQLFREDNGA IRVYASSTIG NYILPAMIAR YRQHYPALPL 
ELSVGNSQDV INAVLDFRVD IGLIEGPCHS TEIISEPWLE DELVVFAAPS SPLTQGPVTL 
EQLAASPWIL RERGSGTREI VDYLLLSHLP RFHMAMELGN SEAIKHAVRH GLGISCLSRR 
VIAEQLQAGT LGEVAVPLPR LVRTLWRVHH RQKHLSNALQ RFLSYCE